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Zinc in PDB 1xto: Crystal Structure of the Coenzyme Pqq Synthesis Protein (Pqqb) From Pseudomonas Putida, Northeast Structural Genomics Target PPR6

Protein crystallography data

The structure of Crystal Structure of the Coenzyme Pqq Synthesis Protein (Pqqb) From Pseudomonas Putida, Northeast Structural Genomics Target PPR6, PDB code: 1xto was solved by F.Forouhar, Y.Chen, A.Kuzin, S.M.Vorobiev, R.Xiao, T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomicsconsortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.34 / 2.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.051, 86.051, 110.666, 90.00, 90.00, 90.00
R / Rfree (%) 22.7 / 28.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Coenzyme Pqq Synthesis Protein (Pqqb) From Pseudomonas Putida, Northeast Structural Genomics Target PPR6 (pdb code 1xto). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Coenzyme Pqq Synthesis Protein (Pqqb) From Pseudomonas Putida, Northeast Structural Genomics Target PPR6, PDB code: 1xto:

Zinc binding site 1 out of 1 in 1xto

Go back to Zinc Binding Sites List in 1xto
Zinc binding site 1 out of 1 in the Crystal Structure of the Coenzyme Pqq Synthesis Protein (Pqqb) From Pseudomonas Putida, Northeast Structural Genomics Target PPR6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Coenzyme Pqq Synthesis Protein (Pqqb) From Pseudomonas Putida, Northeast Structural Genomics Target PPR6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn312

b:40.4
occ:1.00
SG A:CYS24 2.4 51.0 1.0
SG A:CYS21 2.5 50.2 1.0
SG A:CYS19 2.5 38.9 1.0
OD1 A:ASN272 2.9 43.0 1.0
CB A:CYS19 3.2 42.4 1.0
CB A:ASN272 3.3 44.6 1.0
CB A:CYS24 3.4 54.3 1.0
CG A:ASN272 3.4 45.0 1.0
CB A:CYS21 3.7 51.1 1.0
O A:ASN272 4.2 47.2 1.0
C A:ASN272 4.2 46.5 1.0
N A:CYS21 4.3 51.0 1.0
N A:CYS24 4.4 54.5 1.0
O A:CYS19 4.4 43.1 1.0
CA A:ASN272 4.4 45.2 1.0
C A:CYS19 4.5 43.7 1.0
CA A:CYS19 4.5 41.5 1.0
CA A:CYS24 4.5 54.2 1.0
CA A:CYS21 4.6 52.3 1.0
CB A:GLN16 4.6 37.0 1.0
ND2 A:ASN272 4.6 45.0 1.0
N A:THR273 4.7 47.3 1.0
CG2 A:THR273 4.8 45.8 1.0
N A:GLN16 4.8 36.4 1.0

Reference:

F.Forouhar, Y.Chen, A.Kuzin, S.M.Vorobiev, R.Xiao, T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong. Crystal Structure of the Coenzyme Pqq Synthesis Protein (Pqqb) From Pseudomonas Putida, Northeast Structural Genomics Target PPR6 To Be Published.
Page generated: Wed Oct 16 20:35:46 2024

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