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Zinc in PDB 1xpz: Structure of Human Carbonic Anhydrase II with 4-[4-O- Sulfamoylbenzyl)(4-Cyanophenyl)Amino]-4H-[1,2,4]-Triazole

Enzymatic activity of Structure of Human Carbonic Anhydrase II with 4-[4-O- Sulfamoylbenzyl)(4-Cyanophenyl)Amino]-4H-[1,2,4]-Triazole

All present enzymatic activity of Structure of Human Carbonic Anhydrase II with 4-[4-O- Sulfamoylbenzyl)(4-Cyanophenyl)Amino]-4H-[1,2,4]-Triazole:
4.2.1.1;

Protein crystallography data

The structure of Structure of Human Carbonic Anhydrase II with 4-[4-O- Sulfamoylbenzyl)(4-Cyanophenyl)Amino]-4H-[1,2,4]-Triazole, PDB code: 1xpz was solved by M.D.Lloyd, N.Thiyagarajan, Y.T.Ho, L.W.L.Woo, O.B.Sutcliffe, A.Purohit, M.J.Reed, K.R.Acharya, B.V.L.Potter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.69 / 2.02
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.569, 72.792, 75.165, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 22.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Human Carbonic Anhydrase II with 4-[4-O- Sulfamoylbenzyl)(4-Cyanophenyl)Amino]-4H-[1,2,4]-Triazole (pdb code 1xpz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Human Carbonic Anhydrase II with 4-[4-O- Sulfamoylbenzyl)(4-Cyanophenyl)Amino]-4H-[1,2,4]-Triazole, PDB code: 1xpz:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1xpz

Go back to Zinc Binding Sites List in 1xpz
Zinc binding site 1 out of 2 in the Structure of Human Carbonic Anhydrase II with 4-[4-O- Sulfamoylbenzyl)(4-Cyanophenyl)Amino]-4H-[1,2,4]-Triazole


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Human Carbonic Anhydrase II with 4-[4-O- Sulfamoylbenzyl)(4-Cyanophenyl)Amino]-4H-[1,2,4]-Triazole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn262

b:17.2
occ:1.00
ND1 A:HIS119 2.1 13.9 1.0
NE2 A:HIS94 2.1 15.4 1.0
NE2 A:HIS96 2.2 10.7 1.0
N1 A:4TZ270 2.3 38.1 1.0
O2 A:4TZ270 2.9 34.8 1.0
CE1 A:HIS119 2.9 13.4 1.0
CD2 A:HIS96 3.0 13.8 1.0
S2 A:4TZ270 3.0 34.4 1.0
CD2 A:HIS94 3.0 13.4 1.0
CE1 A:HIS94 3.1 15.4 1.0
CG A:HIS119 3.2 15.8 1.0
CE1 A:HIS96 3.3 13.0 1.0
CB A:HIS119 3.6 13.7 1.0
O1 A:4TZ270 3.7 40.0 1.0
OG1 A:THR199 3.8 16.2 1.0
NE2 A:HIS119 4.1 11.9 1.0
CG A:HIS94 4.2 15.4 1.0
OE1 A:GLU106 4.2 16.7 1.0
ND1 A:HIS94 4.2 15.7 1.0
CG A:HIS96 4.2 12.8 1.0
CD2 A:HIS119 4.2 11.3 1.0
O A:HOH353 4.3 31.9 1.0
ND1 A:HIS96 4.3 10.9 1.0
O3 A:4TZ270 4.4 40.4 1.0
C14 A:4TZ270 4.9 44.8 1.0

Zinc binding site 2 out of 2 in 1xpz

Go back to Zinc Binding Sites List in 1xpz
Zinc binding site 2 out of 2 in the Structure of Human Carbonic Anhydrase II with 4-[4-O- Sulfamoylbenzyl)(4-Cyanophenyl)Amino]-4H-[1,2,4]-Triazole


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Human Carbonic Anhydrase II with 4-[4-O- Sulfamoylbenzyl)(4-Cyanophenyl)Amino]-4H-[1,2,4]-Triazole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn263

b:35.1
occ:1.00
ND1 A:HIS36 2.3 31.6 1.0
O A:HOH389 2.3 29.2 1.0
CE1 A:HIS36 3.2 31.3 1.0
CG A:HIS36 3.3 32.6 1.0
O A:HOH390 3.5 81.4 1.0
CB A:HIS36 3.6 32.4 1.0
CA A:HIS36 4.2 30.9 1.0
NE2 A:HIS36 4.3 33.4 1.0
CD2 A:HIS36 4.4 33.9 1.0
O A:HIS36 4.7 33.4 1.0
C A:HIS36 5.0 31.8 1.0

Reference:

M.D.Lloyd, N.Thiyagarajan, Y.T.Ho, L.W.L.Woo, O.B.Sutcliffe, A.Purohit, M.J.Reed, K.R.Acharya, B.V.L.Potter. First Crystal Structures of Human Carbonic Anhydrase II in Complex with Dual Aromatase-Steroid Sulfatase Inhibitors(,) Biochemistry V. 44 6858 2005.
ISSN: ISSN 0006-2960
PubMed: 15865431
DOI: 10.1021/BI047692E
Page generated: Wed Oct 16 20:34:09 2024

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