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Zinc in PDB 1xov: The Crystal Structure of the Listeria Monocytogenes Bacteriophage Psa Endolysin Plypsa

Enzymatic activity of The Crystal Structure of the Listeria Monocytogenes Bacteriophage Psa Endolysin Plypsa

All present enzymatic activity of The Crystal Structure of the Listeria Monocytogenes Bacteriophage Psa Endolysin Plypsa:
3.5.1.28;

Protein crystallography data

The structure of The Crystal Structure of the Listeria Monocytogenes Bacteriophage Psa Endolysin Plypsa, PDB code: 1xov was solved by I.P.Korndoerfer, A.Skerra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.80
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 90.586, 90.586, 213.667, 90.00, 90.00, 120.00
R / Rfree (%) 17 / 19.8

Other elements in 1xov:

The structure of The Crystal Structure of the Listeria Monocytogenes Bacteriophage Psa Endolysin Plypsa also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of the Listeria Monocytogenes Bacteriophage Psa Endolysin Plypsa (pdb code 1xov). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of the Listeria Monocytogenes Bacteriophage Psa Endolysin Plypsa, PDB code: 1xov:

Zinc binding site 1 out of 1 in 1xov

Go back to Zinc Binding Sites List in 1xov
Zinc binding site 1 out of 1 in the The Crystal Structure of the Listeria Monocytogenes Bacteriophage Psa Endolysin Plypsa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of the Listeria Monocytogenes Bacteriophage Psa Endolysin Plypsa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:22.3
occ:1.00
 NE2 A:HIS10 2.0 32.5 1.0
N A:GLU2001 2.1 23.0 0.8
ND1 A:HIS79 2.1 33.9 1.0
OE2 A:GLU23 2.1 31.4 1.0
O A:GLU2001 2.3 20.1 0.8
CD A:GLU23 2.8 35.2 1.0
OE1 A:GLU23 2.8 35.3 1.0
CD2 A:HIS10 3.0 35.6 1.0
CE1 A:HIS79 3.0 36.3 1.0
C A:GLU2001 3.0 28.6 0.8
CA A:GLU2001 3.0 27.4 0.8
CE1 A:HIS10 3.1 36.2 1.0
CG A:HIS79 3.1 33.1 1.0
CG A:GLU2001 3.4 35.2 0.8
CB A:HIS79 3.5 33.6 1.0
CB A:GLU2001 3.7 32.2 0.8
O A:LEU80 4.0 40.4 1.0
CG A:HIS10 4.1 33.6 1.0
NE2 A:HIS79 4.1 35.9 1.0
ND1 A:HIS10 4.1 33.9 1.0
CD2 A:HIS79 4.2 34.7 1.0
CG A:GLU23 4.2 33.2 1.0
N A:LYS2002 4.3 35.9 0.8
CA A:HIS79 4.4 33.5 1.0
OE2 A:GLU141 4.4 44.7 1.0
O A:HOH2307 4.6 35.1 1.0
N A:LEU80 4.6 34.5 1.0
CD A:GLU2001 4.7 39.9 0.8
OE1 A:GLU141 4.8 44.5 1.0
O A:HOH2286 4.9 29.4 1.0

Reference:

I.P.Korndoerfer, J.Danzer, M.Schmelcher, M.Zimmer, A.Skerra, M.J.Loessner. The Crystal Structure of the Bacteriophage Psa Endolysin Reveals A Unique Fold Responsible For Specific Recognition of Listeria Cell Walls J.Mol.Biol. V. 364 678 2006.
ISSN: ISSN 0022-2836
PubMed: 17010991
DOI: 10.1016/J.JMB.2006.08.069
Page generated: Wed Dec 16 03:12:54 2020

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