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Zinc in PDB 1x62: Solution Structure of the Lim Domain of Carboxyl Terminal Lim Domain Protein 1

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Lim Domain of Carboxyl Terminal Lim Domain Protein 1 (pdb code 1x62). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Lim Domain of Carboxyl Terminal Lim Domain Protein 1, PDB code: 1x62:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1x62

Go back to Zinc Binding Sites List in 1x62
Zinc binding site 1 out of 2 in the Solution Structure of the Lim Domain of Carboxyl Terminal Lim Domain Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Lim Domain of Carboxyl Terminal Lim Domain Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS38 2.1 0.0 1.0
SG A:CYS21 2.3 0.0 1.0
SG A:CYS18 2.3 0.0 1.0
SG A:CYS41 2.4 0.0 1.0
HB2 A:HIS38 2.6 0.0 1.0
HB2 A:CYS18 2.8 0.0 1.0
CB A:CYS18 2.9 0.0 1.0
HB3 A:CYS18 2.9 0.0 1.0
CG A:HIS38 3.0 0.0 1.0
CE1 A:HIS38 3.1 0.0 1.0
CB A:HIS38 3.3 0.0 1.0
H A:CYS21 3.3 0.0 1.0
HB2 A:CYS41 3.4 0.0 1.0
H A:HIS38 3.4 0.0 1.0
HE1 A:HIS38 3.4 0.0 1.0
CB A:CYS41 3.5 0.0 1.0
HB3 A:LYS20 3.6 0.0 1.0
HB3 A:CYS41 3.8 0.0 1.0
CB A:CYS21 3.9 0.0 1.0
HB3 A:HIS38 4.0 0.0 1.0
HB3 A:CYS21 4.1 0.0 1.0
N A:HIS38 4.1 0.0 1.0
H A:GLY22 4.1 0.0 1.0
N A:CYS21 4.2 0.0 1.0
CD2 A:HIS38 4.2 0.0 1.0
NE2 A:HIS38 4.2 0.0 1.0
HG1 A:THR23 4.3 0.0 1.0
CA A:HIS38 4.3 0.0 1.0
CA A:CYS18 4.4 0.0 1.0
CB A:LYS20 4.6 0.0 1.0
H A:CYS41 4.6 0.0 1.0
HB2 A:CYS21 4.7 0.0 1.0
H A:LYS20 4.7 0.0 1.0
CA A:CYS21 4.7 0.0 1.0
HG12 A:ILE25 4.8 0.0 1.0
HG3 A:GLU40 4.8 0.0 1.0
HA A:CYS18 4.8 0.0 1.0
OG1 A:THR23 4.9 0.0 1.0
CA A:CYS41 4.9 0.0 1.0
HA A:ARG37 4.9 0.0 1.0
H A:THR23 4.9 0.0 1.0
HB2 A:LYS20 4.9 0.0 1.0
HA A:HIS38 4.9 0.0 1.0
H A:ASP19 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 1x62

Go back to Zinc Binding Sites List in 1x62
Zinc binding site 2 out of 2 in the Solution Structure of the Lim Domain of Carboxyl Terminal Lim Domain Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Lim Domain of Carboxyl Terminal Lim Domain Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
ND1 A:HIS68 2.0 0.0 1.0
SG A:CYS44 2.3 0.0 1.0
SG A:CYS65 2.3 0.0 1.0
SG A:CYS47 2.3 0.0 1.0
HB3 A:ASP46 2.6 0.0 1.0
H A:CYS47 2.7 0.0 1.0
HB2 A:HIS68 2.8 0.0 1.0
CE1 A:HIS68 3.0 0.0 1.0
CG A:HIS68 3.1 0.0 1.0
H A:CYS65 3.1 0.0 1.0
HE1 A:HIS68 3.2 0.0 1.0
HB3 A:CYS44 3.4 0.0 1.0
CB A:CYS44 3.4 0.0 1.0
CB A:HIS68 3.4 0.0 1.0
HB2 A:CYS44 3.5 0.0 1.0
N A:CYS47 3.6 0.0 1.0
CB A:ASP46 3.7 0.0 1.0
CB A:CYS65 3.7 0.0 1.0
HB3 A:CYS65 3.7 0.0 1.0
CB A:CYS47 3.8 0.0 1.0
H A:GLY48 3.8 0.0 1.0
H A:HIS68 4.0 0.0 1.0
H A:ASP46 4.0 0.0 1.0
N A:CYS65 4.0 0.0 1.0
HB3 A:HIS68 4.0 0.0 1.0
HB2 A:ASP46 4.0 0.0 1.0
HB3 A:CYS47 4.1 0.0 1.0
HG21 A:THR49 4.1 0.0 1.0
HB3 A:TYR64 4.1 0.0 1.0
NE2 A:HIS68 4.1 0.0 1.0
CD2 A:HIS68 4.2 0.0 1.0
CA A:CYS47 4.3 0.0 1.0
CA A:CYS65 4.4 0.0 1.0
CA A:ASP46 4.5 0.0 1.0
CG A:ASP46 4.5 0.0 1.0
HD3 A:LYS67 4.5 0.0 1.0
N A:ASP46 4.5 0.0 1.0
HB3 A:LYS67 4.5 0.0 1.0
C A:ASP46 4.5 0.0 1.0
HB2 A:CYS65 4.5 0.0 1.0
N A:HIS68 4.6 0.0 1.0
CA A:HIS68 4.6 0.0 1.0
HB2 A:CYS47 4.6 0.0 1.0
HD1 A:TYR64 4.7 0.0 1.0
HA A:TYR64 4.7 0.0 1.0
H A:THR49 4.7 0.0 1.0
OD1 A:ASP46 4.7 0.0 1.0
N A:GLY48 4.7 0.0 1.0
CA A:CYS44 4.8 0.0 1.0
HG22 A:THR49 4.8 0.0 1.0
O A:CYS65 4.8 0.0 1.0
CG2 A:THR49 4.9 0.0 1.0
HE2 A:HIS68 5.0 0.0 1.0
H A:THR45 5.0 0.0 1.0

Reference:

X.R.Qin, T.Nagashima, F.Hayashi, S.Yokoyama. Solution Structure of the Lim Domain of Carboxyl Terminal Lim Domain Protein 1 To Be Published.
Page generated: Wed Dec 16 03:11:35 2020

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