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Zinc in PDB 1x5w: Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2 (pdb code 1x5w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2, PDB code: 1x5w:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1x5w

Go back to Zinc Binding Sites List in 1x5w
Zinc binding site 1 out of 2 in the Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
NE2 A:HIS32 2.3 0.0 1.0
SG A:CYS15 2.3 0.0 1.0
SG A:CYS12 2.3 0.0 1.0
NE2 A:HIS28 2.3 0.0 1.0
H A:CYS15 2.9 0.0 1.0
HB2 A:GLU14 2.9 0.0 1.0
CE1 A:HIS28 3.1 0.0 1.0
HB3 A:TYR17 3.1 0.0 1.0
HE1 A:HIS28 3.1 0.0 1.0
HB3 A:CYS12 3.2 0.0 1.0
CD2 A:HIS32 3.3 0.0 1.0
CB A:CYS12 3.3 0.0 1.0
CE1 A:HIS32 3.3 0.0 1.0
CD2 A:HIS28 3.4 0.0 1.0
HD2 A:HIS32 3.5 0.0 1.0
HB2 A:CYS12 3.5 0.0 1.0
CB A:CYS15 3.5 0.0 1.0
HB3 A:CYS15 3.5 0.0 1.0
N A:CYS15 3.5 0.0 1.0
HE1 A:HIS32 3.5 0.0 1.0
HD2 A:HIS28 3.8 0.0 1.0
CB A:GLU14 3.9 0.0 1.0
HG23 A:ILE31 4.0 0.0 1.0
CA A:CYS15 4.0 0.0 1.0
HB2 A:TYR17 4.0 0.0 1.0
CB A:TYR17 4.1 0.0 1.0
HG22 A:ILE31 4.1 0.0 1.0
H A:TYR17 4.2 0.0 1.0
HB3 A:GLU14 4.2 0.0 1.0
ND1 A:HIS28 4.2 0.0 1.0
H A:GLU14 4.3 0.0 1.0
HA A:GLU29 4.4 0.0 1.0
HB2 A:CYS15 4.4 0.0 1.0
C A:GLU14 4.4 0.0 1.0
ND1 A:HIS32 4.4 0.0 1.0
CG2 A:ILE31 4.4 0.0 1.0
CG A:HIS28 4.4 0.0 1.0
CG A:HIS32 4.5 0.0 1.0
C A:CYS15 4.5 0.0 1.0
HG21 A:ILE31 4.5 0.0 1.0
O A:CYS15 4.5 0.0 1.0
CA A:GLU14 4.6 0.0 1.0
CA A:CYS12 4.7 0.0 1.0
N A:GLU14 4.7 0.0 1.0
CG A:TYR17 4.9 0.0 1.0
HG3 A:GLU14 4.9 0.0 1.0
HD1 A:TYR17 4.9 0.0 1.0
N A:TYR17 4.9 0.0 1.0
CG A:GLU14 4.9 0.0 1.0
HA A:CYS15 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1x5w

Go back to Zinc Binding Sites List in 1x5w
Zinc binding site 2 out of 2 in the Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS40 2.3 0.0 1.0
NE2 A:HIS56 2.3 0.0 1.0
NE2 A:HIS61 2.4 0.0 1.0
SG A:CYS43 2.4 0.0 1.0
H A:CYS43 2.6 0.0 1.0
HD2 A:HIS61 2.9 0.0 1.0
CD2 A:HIS61 3.0 0.0 1.0
HB2 A:TYR42 3.1 0.0 1.0
HB3 A:PHE45 3.2 0.0 1.0
CE1 A:HIS56 3.2 0.0 1.0
HB3 A:CYS43 3.2 0.0 1.0
CB A:CYS43 3.3 0.0 1.0
HE1 A:HIS56 3.3 0.0 1.0
N A:CYS43 3.4 0.0 1.0
CB A:CYS40 3.4 0.0 1.0
CD2 A:HIS56 3.4 0.0 1.0
HB3 A:CYS40 3.4 0.0 1.0
HB2 A:CYS40 3.5 0.0 1.0
CE1 A:HIS61 3.6 0.0 1.0
HD2 A:HIS56 3.7 0.0 1.0
HE1 A:MET57 3.8 0.0 1.0
CA A:CYS43 3.8 0.0 1.0
HE1 A:HIS61 4.0 0.0 1.0
HE2 A:MET57 4.0 0.0 1.0
HB2 A:PHE45 4.1 0.0 1.0
CB A:PHE45 4.1 0.0 1.0
H A:PHE45 4.1 0.0 1.0
H A:TYR42 4.1 0.0 1.0
CB A:TYR42 4.1 0.0 1.0
CG A:HIS61 4.3 0.0 1.0
HB2 A:CYS43 4.3 0.0 1.0
CE A:MET57 4.3 0.0 1.0
C A:CYS43 4.3 0.0 1.0
O A:CYS43 4.4 0.0 1.0
HB2 A:PHE60 4.4 0.0 1.0
ND1 A:HIS56 4.4 0.0 1.0
HB3 A:TYR42 4.4 0.0 1.0
C A:TYR42 4.4 0.0 1.0
HE3 A:MET57 4.5 0.0 1.0
ND1 A:HIS61 4.5 0.0 1.0
CG A:HIS56 4.5 0.0 1.0
CA A:TYR42 4.6 0.0 1.0
N A:TYR42 4.7 0.0 1.0
HD2 A:PHE45 4.7 0.0 1.0
HA A:MET57 4.8 0.0 1.0
CA A:CYS40 4.8 0.0 1.0
HA A:CYS43 4.8 0.0 1.0
N A:PHE45 4.9 0.0 1.0
HD1 A:TYR42 4.9 0.0 1.0
H A:ASN41 4.9 0.0 1.0
CG A:PHE45 4.9 0.0 1.0

Reference:

M.Yoneyama, S.Koshiba, N.Tochio, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2 To Be Published.
Page generated: Wed Dec 16 03:11:26 2020

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