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Zinc in PDB 1x31: Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96

Enzymatic activity of Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96

All present enzymatic activity of Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96:
1.5.3.1;

Protein crystallography data

The structure of Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96, PDB code: 1x31 was solved by K.Ida, T.Moriguchi, H.Suzuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.06 / 2.15
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 199.112, 199.112, 197.205, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 23.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 (pdb code 1x31). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96, PDB code: 1x31:

Zinc binding site 1 out of 1 in 1x31

Go back to Zinc Binding Sites List in 1x31
Zinc binding site 1 out of 1 in the Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1006

b:30.7
occ:1.00
ND1 D:HIS59 2.3 26.8 1.0
SG D:CYS9 2.3 28.3 1.0
SG D:CYS63 2.3 30.4 1.0
SG D:CYS6 2.4 28.1 1.0
CE1 D:HIS59 3.2 35.8 1.0
CG D:HIS59 3.2 30.7 1.0
CB D:CYS63 3.3 29.9 1.0
CB D:CYS9 3.3 22.9 1.0
CB D:CYS6 3.5 24.8 1.0
CB D:HIS59 3.5 25.2 1.0
N D:CYS63 3.5 33.3 1.0
N D:CYS9 3.7 27.0 1.0
CA D:CYS63 4.0 33.0 1.0
CA D:CYS9 4.1 26.9 1.0
CB D:ASN8 4.1 28.5 1.0
NE2 D:HIS59 4.4 26.4 1.0
CD2 D:HIS59 4.4 29.1 1.0
C D:ASN8 4.6 29.9 1.0
C D:GLY62 4.6 34.5 1.0
ND2 D:ASN8 4.7 28.4 1.0
CA D:ASN8 4.7 31.1 1.0
CA D:GLY62 4.8 31.2 1.0
N D:ASN8 4.8 32.4 1.0
O C:HOH3074 4.8 23.2 1.0
CA D:CYS6 4.9 28.3 1.0
C D:CYS63 4.9 28.3 1.0
CG D:ASN8 5.0 30.6 1.0
N D:ARG64 5.0 28.1 1.0

Reference:

K.Ida, T.Moriguchi, H.Suzuki. Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 Biochem.Biophys.Res.Commun. V. 333 359 2005.
ISSN: ISSN 0006-291X
PubMed: 15946648
DOI: 10.1016/J.BBRC.2005.05.116
Page generated: Wed Dec 16 03:10:56 2020

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