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Zinc in PDB 1wja: Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (D Form), uc(Nmr), Regularized Mean Structure

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (D Form), uc(Nmr), Regularized Mean Structure (pdb code 1wja). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (D Form), uc(Nmr), Regularized Mean Structure, PDB code: 1wja:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1wja

Go back to Zinc Binding Sites List in 1wja
Zinc binding site 1 out of 2 in the Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (D Form), uc(Nmr), Regularized Mean Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (D Form), uc(Nmr), Regularized Mean Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn56

b:0.3
occ:1.00
ND1 A:HIS12 2.1 0.4 1.0
SG A:CYS43 2.2 0.4 1.0
ND1 A:HIS16 2.2 0.3 1.0
SG A:CYS40 2.3 0.4 1.0
HB2 A:HIS12 3.0 0.4 1.0
HA A:HIS12 3.0 0.3 1.0
HB3 A:HIS16 3.1 0.4 1.0
CG A:HIS12 3.1 0.4 1.0
CE1 A:HIS12 3.2 0.4 1.0
CE1 A:HIS16 3.2 0.3 1.0
HB3 A:CYS40 3.2 0.3 1.0
CG A:HIS16 3.3 0.3 1.0
CB A:CYS40 3.3 0.3 1.0
HE1 A:HIS16 3.4 0.3 1.0
HE1 A:HIS12 3.4 0.5 1.0
CB A:HIS12 3.4 0.4 1.0
HB2 A:LYS42 3.4 0.4 1.0
HB2 A:CYS40 3.5 0.3 1.0
H A:CYS43 3.5 0.4 1.0
CB A:HIS16 3.6 0.3 1.0
CA A:HIS12 3.7 0.3 1.0
HB2 A:HIS16 3.8 0.4 1.0
CB A:CYS43 3.8 0.4 1.0
HB2 A:CYS43 4.1 0.4 1.0
N A:CYS43 4.1 0.4 1.0
CD2 A:HIS12 4.3 0.4 1.0
NE2 A:HIS12 4.3 0.5 1.0
NE2 A:HIS16 4.4 0.3 1.0
CD2 A:HIS16 4.4 0.3 1.0
HB3 A:HIS12 4.4 0.4 1.0
CA A:CYS43 4.5 0.4 1.0
CB A:LYS42 4.5 0.5 1.0
HB3 A:CYS43 4.6 0.5 1.0
CA A:CYS40 4.7 0.3 1.0
N A:HIS12 4.7 0.4 1.0
HD2 A:LYS42 4.7 1.6 1.0
HA A:CYS43 4.7 0.5 1.0
HB3 A:LYS42 4.7 0.5 1.0
C A:HIS12 4.8 0.3 1.0
C A:LYS42 4.9 0.5 1.0
H A:LYS42 4.9 0.4 1.0
HA A:CYS40 5.0 0.3 1.0

Zinc binding site 2 out of 2 in 1wja

Go back to Zinc Binding Sites List in 1wja
Zinc binding site 2 out of 2 in the Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (D Form), uc(Nmr), Regularized Mean Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (D Form), uc(Nmr), Regularized Mean Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn56

b:0.3
occ:1.00
ND1 B:HIS12 2.1 0.4 1.0
SG B:CYS43 2.2 0.4 1.0
ND1 B:HIS16 2.2 0.3 1.0
SG B:CYS40 2.3 0.4 1.0
HB2 B:HIS12 3.0 0.4 1.0
HA B:HIS12 3.0 0.3 1.0
HB3 B:HIS16 3.1 0.4 1.0
CG B:HIS12 3.1 0.4 1.0
CE1 B:HIS12 3.2 0.5 1.0
CE1 B:HIS16 3.2 0.3 1.0
HB3 B:CYS40 3.2 0.3 1.0
CG B:HIS16 3.3 0.3 1.0
CB B:CYS40 3.3 0.3 1.0
HE1 B:HIS16 3.4 0.3 1.0
HE1 B:HIS12 3.4 0.5 1.0
CB B:HIS12 3.4 0.4 1.0
HB2 B:LYS42 3.4 0.4 1.0
HB2 B:CYS40 3.5 0.3 1.0
H B:CYS43 3.5 0.4 1.0
CB B:HIS16 3.6 0.4 1.0
CA B:HIS12 3.7 0.3 1.0
HB2 B:HIS16 3.8 0.4 1.0
CB B:CYS43 3.8 0.4 1.0
HB2 B:CYS43 4.1 0.4 1.0
N B:CYS43 4.1 0.4 1.0
CD2 B:HIS12 4.3 0.5 1.0
NE2 B:HIS12 4.3 0.5 1.0
NE2 B:HIS16 4.4 0.3 1.0
CD2 B:HIS16 4.4 0.3 1.0
HB3 B:HIS12 4.4 0.4 1.0
CA B:CYS43 4.5 0.4 1.0
CB B:LYS42 4.5 0.5 1.0
HB3 B:CYS43 4.6 0.5 1.0
CA B:CYS40 4.7 0.3 1.0
N B:HIS12 4.7 0.4 1.0
HD2 B:LYS42 4.7 1.6 1.0
HA B:CYS43 4.7 0.5 1.0
HB3 B:LYS42 4.7 0.5 1.0
C B:HIS12 4.8 0.3 1.0
C B:LYS42 4.9 0.5 1.0
H B:LYS42 4.9 0.4 1.0
HA B:CYS40 5.0 0.3 1.0

Reference:

M.Cai, R.Zheng, M.Caffrey, R.Craigie, G.M.Clore, A.M.Gronenborn. Solution Structure of the N-Terminal Zinc Binding Domain of Hiv-1 Integrase. Nat.Struct.Biol. V. 4 567 1997.
ISSN: ISSN 1072-8368
PubMed: 9228950
DOI: 10.1038/NSB0797-567
Page generated: Mon Jan 25 16:15:52 2021

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