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Zinc in PDB 1w3s: The Crystal Structure of Reco From Deinococcus Radiodurans.

Protein crystallography data

The structure of The Crystal Structure of Reco From Deinococcus Radiodurans., PDB code: 1w3s was solved by I.Leiros, J.Timmins, D.R.Hall, G.A.Leonard, S.M.Mcsweeney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 95.35 / 2.4
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 134.429, 52.351, 101.085, 90.00, 106.32, 90.00
R / Rfree (%) 22.5 / 26.7

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of Reco From Deinococcus Radiodurans. (pdb code 1w3s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Crystal Structure of Reco From Deinococcus Radiodurans., PDB code: 1w3s:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1w3s

Go back to Zinc Binding Sites List in 1w3s
Zinc binding site 1 out of 2 in the The Crystal Structure of Reco From Deinococcus Radiodurans.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Reco From Deinococcus Radiodurans. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1238

b:55.0
occ:1.00
SG A:CYS176 2.2 60.7 1.0
SG A:CYS156 2.2 51.9 1.0
SG A:CYS173 2.5 59.7 1.0
SG A:CYS153 2.5 58.8 1.0
CB A:CYS156 3.1 55.5 1.0
CB A:CYS176 3.4 62.3 1.0
CB A:CYS153 3.5 59.8 1.0
N A:CYS156 3.6 56.1 1.0
CB A:CYS173 3.7 61.8 1.0
CA A:CYS156 3.9 55.8 1.0
N A:CYS173 4.1 62.1 1.0
N A:CYS176 4.2 62.6 1.0
CA A:CYS176 4.4 62.4 1.0
CA A:CYS173 4.4 61.9 1.0
CB A:ALA158 4.5 57.6 1.0
CB A:ARG155 4.6 57.8 1.0
N A:GLY157 4.6 56.0 1.0
C A:CYS156 4.6 55.9 1.0
C A:ARG155 4.8 56.9 1.0
N A:ALA158 4.8 57.0 1.0
O A:CYS173 4.9 61.7 1.0
CA A:CYS153 4.9 60.0 1.0
C A:CYS173 4.9 61.9 1.0

Zinc binding site 2 out of 2 in 1w3s

Go back to Zinc Binding Sites List in 1w3s
Zinc binding site 2 out of 2 in the The Crystal Structure of Reco From Deinococcus Radiodurans.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of Reco From Deinococcus Radiodurans. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1239

b:37.3
occ:1.00
SG B:CYS156 2.3 37.7 1.0
SG B:CYS153 2.3 42.6 1.0
SG B:CYS176 2.4 41.7 1.0
SG B:CYS173 2.4 35.9 1.0
CB B:CYS153 3.2 42.6 1.0
CB B:CYS156 3.2 38.5 1.0
CB B:CYS176 3.3 44.4 1.0
CB B:CYS173 3.6 40.5 1.0
N B:CYS156 3.6 39.4 1.0
CA B:CYS156 4.0 39.0 1.0
N B:CYS173 4.0 41.6 1.0
N B:CYS176 4.3 44.3 1.0
CA B:CYS173 4.3 41.1 1.0
CA B:CYS176 4.4 44.5 1.0
CB B:ARG155 4.6 40.5 1.0
CA B:CYS153 4.7 43.2 1.0
CB B:ALA158 4.7 39.4 1.0
N B:GLY157 4.7 38.4 1.0
C B:CYS156 4.7 38.8 1.0
C B:ARG155 4.7 39.9 1.0
N B:ALA158 4.9 39.1 1.0
C B:CYS173 4.9 41.1 1.0
O B:CYS173 4.9 40.3 1.0
N B:ARG155 5.0 40.7 1.0
CA B:ARG155 5.0 40.3 1.0

Reference:

I.Leiros, J.Timmins, D.R.Hall, S.M.Mcsweeney. Crystal Structure and Dna-Binding Analysis of Reco From Deinococcus Radiodurans Embo J. V. 24 906 2005.
ISSN: ISSN 0261-4189
PubMed: 15719017
DOI: 10.1038/SJ.EMBOJ.7600582
Page generated: Fri Sep 25 23:56:49 2020
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