Zinc in PDB 1ohl: Yeast 5-Aminolaevulinic Acid Dehydratase Putative Cyclic Reaction Intermediate Complex

All present enzymatic activity of Yeast 5-Aminolaevulinic Acid Dehydratase Putative Cyclic Reaction Intermediate Complex:
4.2.1.24;

The structure of Yeast 5-Aminolaevulinic Acid Dehydratase Putative Cyclic Reaction Intermediate Complex, PDB code: 1ohl was solved by P.T.Erskine, L.Coates, D.Butler, J.H.Youell, A.A.Brindley, S.P.Wood, M.J.Warren, P.M.Shoolingin-Jordan, J.B.Cooper, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.70 / 1.60
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	103.200, 103.200, 167.700, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 24.1

The binding sites of Zinc atom in the Yeast 5-Aminolaevulinic Acid Dehydratase Putative Cyclic Reaction Intermediate Complex (pdb code 1ohl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Yeast 5-Aminolaevulinic Acid Dehydratase Putative Cyclic Reaction Intermediate Complex, PDB code: 1ohl:

Zinc binding site 1 out of 1 in the Yeast 5-Aminolaevulinic Acid Dehydratase Putative Cyclic Reaction Intermediate Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Yeast 5-Aminolaevulinic Acid Dehydratase Putative Cyclic Reaction Intermediate Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn400 b:42.5 occ:1.00 N1 A:PBG1263 2.1 41.5 0.8 SG A:CYS133 2.3 33.3 1.0 SG A:CYS143 2.3 43.9 1.0 SG A:CYS135 2.3 40.5 1.0 CB A:CYS135 3.1 29.3 1.0 CHA A:PBG1263 3.2 40.7 0.8 CB A:CYS133 3.3 28.2 1.0 CB A:CYS143 3.3 49.8 1.0 CA A:CYS143 3.8 54.2 1.0 N A:CYS135 4.0 30.2 1.0 O A:HOH2217 4.1 38.2 1.0 CA A:CYS135 4.1 31.3 1.0 O A:SER179 4.4 34.1 1.0 OG A:SER179 4.5 32.2 1.0 C1A A:PBG1263 4.5 34.8 0.8 N A:CYS143 4.5 50.2 1.0 O A:HOH2195 4.6 40.0 1.0 CA A:CYS133 4.7 28.3 1.0 CA A:ASP180 4.7 35.5 1.0 N A:LEU134 4.7 31.8 1.0 NH2 A:ARG232 4.8 75.3 1.0 C A:SER179 4.8 30.6 1.0 CZ A:ARG232 4.8 73.5 1.0 N A:ASP180 5.0 31.9 1.0 C A:CYS143 5.0 59.4 1.0

P.T.Erskine, L.Coates, D.Butler, J.H.Youell, A.A.Brindley, S.P.Wood, M.J.Warren, P.M.Shoolingin-Jordan, J.B.Cooper. X-Ray Structure of A Putative Reaction Intermediateof 5-Aminolaevulinic Acid Dehydratase Biochem.J. V. 373 733 2003.
ISSN: ISSN 0264-6021
PubMed: 12777167
DOI: 10.1042/BJ20030513