Zinc in PDB 1odg: Very-Short-Patch Dna Repair Endonuclease Bound to Its Reaction Product Site

The structure of Very-Short-Patch Dna Repair Endonuclease Bound to Its Reaction Product Site, PDB code: 1odg was solved by K.A.Bunting, S.M.Roe, A.Headley, T.Brown, R.Savva, L.H.Pearl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.7 / 2.8
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	102.805, 102.805, 64.290, 90.00, 90.00, 120.00
R / Rfree (%)	28.73 / 35.61

The binding sites of Zinc atom in the Very-Short-Patch Dna Repair Endonuclease Bound to Its Reaction Product Site (pdb code 1odg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Very-Short-Patch Dna Repair Endonuclease Bound to Its Reaction Product Site, PDB code: 1odg:

Zinc binding site 1 out of 1 in the Very-Short-Patch Dna Repair Endonuclease Bound to Its Reaction Product Site


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Very-Short-Patch Dna Repair Endonuclease Bound to Its Reaction Product Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn200 b:56.9 occ:1.00 ND1 A:HIS71 1.9 60.1 1.0 SG A:CYS73 1.9 49.9 1.0 SG A:CYS66 2.1 45.9 1.0 SG A:CYS117 2.5 73.1 1.0 CB A:CYS73 2.6 49.8 1.0 CE1 A:HIS71 2.8 58.4 1.0 CG A:HIS71 2.9 58.8 1.0 CB A:CYS117 3.0 71.8 1.0 CB A:HIS71 3.3 55.1 1.0 CB A:CYS66 3.4 48.8 1.0 NE2 A:HIS71 3.9 57.8 1.0 CD2 A:HIS71 4.0 59.0 1.0 CA A:CYS73 4.0 53.8 1.0 CB A:TRP115 4.1 68.3 1.0 CA A:CYS117 4.2 72.9 1.0 N A:CYS117 4.2 70.8 1.0 N A:CYS73 4.4 55.9 1.0 CA A:CYS66 4.5 49.5 1.0 CG A:TRP115 4.7 68.3 1.0 CA A:HIS71 4.7 53.4 1.0 C A:CYS73 4.7 57.1 1.0 O A:HIS71 4.8 49.4 1.0 C A:HIS71 4.8 52.0 1.0 CE3 A:TRP115 4.9 66.2 1.0 O A:HOH2032 4.9 48.0 1.0 CD2 A:TRP115 4.9 67.3 1.0

K.A.Bunting, S.M.Roe, A.Headley, T.Brown, R.Savva, L.H.Pearl. Crystal Structure of the Escherichia Coli Dcm Very-Short-Patch Dna Repair Endonuclease Bound to Its Reaction Product-Site in A Dna Superhelix Nucleic Acids Res. V. 31 1633 2003.
ISSN: ISSN 0305-1048
PubMed: 12626704
DOI: 10.1093/NAR/GKG273