Zinc in PDB 1nyp: 4TH Lim Domain of Pinch Protein

The binding sites of Zinc atom in the 4TH Lim Domain of Pinch Protein (pdb code 1nyp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the 4TH Lim Domain of Pinch Protein, PDB code: 1nyp:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the 4TH Lim Domain of Pinch Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 4TH Lim Domain of Pinch Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn67 b:0.0 occ:1.00 ND1 A:HIS28 2.0 0.0 1.0 ND1 A:HIS31 2.0 0.0 1.0 SG A:CYS11 2.3 0.0 1.0 SG A:CYS8 2.3 0.0 1.0 HB3 A:CYS8 2.5 0.0 1.0 CB A:CYS8 2.7 0.0 1.0 HB2 A:HIS28 2.7 0.0 1.0 HB2 A:CYS8 2.9 0.0 1.0 HB1 A:ALA10 2.9 0.0 1.0 HB2 A:HIS31 3.0 0.0 1.0 CE1 A:HIS31 3.0 0.0 1.0 CE1 A:HIS28 3.0 0.0 1.0 CG A:HIS28 3.0 0.0 1.0 CG A:HIS31 3.1 0.0 1.0 H A:CYS11 3.1 0.0 1.0 HE1 A:HIS31 3.2 0.0 1.0 HE1 A:HIS28 3.2 0.0 1.0 H A:HIS28 3.3 0.0 1.0 CB A:HIS28 3.4 0.0 1.0 CB A:HIS31 3.4 0.0 1.0 HB3 A:HIS31 3.8 0.0 1.0 N A:CYS11 3.8 0.0 1.0 CB A:CYS11 3.9 0.0 1.0 CB A:ALA10 3.9 0.0 1.0 HB2 A:ALA10 4.0 0.0 1.0 H A:ALA10 4.1 0.0 1.0 HB3 A:CYS11 4.1 0.0 1.0 HB3 A:HIS28 4.1 0.0 1.0 N A:HIS28 4.1 0.0 1.0 CD2 A:HIS28 4.1 0.0 1.0 NE2 A:HIS28 4.2 0.0 1.0 NE2 A:HIS31 4.2 0.0 1.0 CD2 A:HIS31 4.2 0.0 1.0 CA A:CYS8 4.2 0.0 1.0 HB2 A:ARG13 4.2 0.0 1.0 CA A:HIS28 4.4 0.0 1.0 CA A:CYS11 4.5 0.0 1.0 H A:ARG13 4.6 0.0 1.0 O A:CYS8 4.6 0.0 1.0 HB3 A:ALA10 4.6 0.0 1.0 C A:CYS8 4.6 0.0 1.0 C A:ALA10 4.6 0.0 1.0 HB2 A:CYS11 4.6 0.0 1.0 CA A:ALA10 4.7 0.0 1.0 H A:HIS31 4.7 0.0 1.0 N A:ALA10 4.7 0.0 1.0 HG12 A:ILE15 4.7 0.0 1.0 HA A:CYS8 4.7 0.0 1.0 H A:CYS8 4.8 0.0 1.0 CA A:HIS31 4.9 0.0 1.0 H A:ARG12 4.9 0.0 1.0 HA A:TRP27 5.0 0.0 1.0 HA A:HIS28 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the 4TH Lim Domain of Pinch Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 4TH Lim Domain of Pinch Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn68 b:0.0 occ:1.00 ND1 A:HIS58 2.0 0.0 1.0 SG A:CYS37 2.3 0.0 1.0 SG A:CYS34 2.3 0.0 1.0 SG A:CYS55 2.3 0.0 1.0 H A:CYS55 2.5 0.0 1.0 HB2 A:CYS55 2.6 0.0 1.0 HB3 A:CYS34 2.6 0.0 1.0 HB2 A:CYS34 2.6 0.0 1.0 CB A:CYS34 2.7 0.0 1.0 CB A:CYS55 2.9 0.0 1.0 HB2 A:HIS58 2.9 0.0 1.0 CE1 A:HIS58 3.0 0.0 1.0 CG A:HIS58 3.1 0.0 1.0 HE1 A:HIS58 3.2 0.0 1.0 H A:CYS37 3.3 0.0 1.0 N A:CYS55 3.3 0.0 1.0 HB3 A:LYS36 3.4 0.0 1.0 HB3 A:CYS37 3.4 0.0 1.0 CB A:HIS58 3.5 0.0 1.0 CB A:CYS37 3.5 0.0 1.0 CA A:CYS55 3.7 0.0 1.0 N A:CYS37 3.8 0.0 1.0 HB3 A:CYS55 3.8 0.0 1.0 HB3 A:HIS58 3.9 0.0 1.0 H A:LYS36 4.1 0.0 1.0 H A:LYS39 4.1 0.0 1.0 HA A:TYR54 4.1 0.0 1.0 NE2 A:HIS58 4.2 0.0 1.0 HB2 A:LYS39 4.2 0.0 1.0 HB3 A:LYS39 4.2 0.0 1.0 H A:HIS58 4.2 0.0 1.0 CA A:CYS34 4.2 0.0 1.0 CD2 A:HIS58 4.2 0.0 1.0 H A:GLU38 4.2 0.0 1.0 HA A:CYS55 4.3 0.0 1.0 CA A:CYS37 4.3 0.0 1.0 HB2 A:CYS37 4.3 0.0 1.0 C A:TYR54 4.4 0.0 1.0 CB A:LYS36 4.4 0.0 1.0 HA A:CYS34 4.6 0.0 1.0 HD1 A:TYR54 4.6 0.0 1.0 C A:LYS36 4.7 0.0 1.0 CB A:LYS39 4.7 0.0 1.0 H A:CYS34 4.7 0.0 1.0 N A:LYS36 4.8 0.0 1.0 N A:GLU38 4.8 0.0 1.0 C A:CYS34 4.8 0.0 1.0 CA A:HIS58 4.8 0.0 1.0 CA A:TYR54 4.8 0.0 1.0 N A:HIS58 4.8 0.0 1.0 C A:CYS55 4.9 0.0 1.0 C A:CYS37 4.9 0.0 1.0 CA A:LYS36 4.9 0.0 1.0 N A:LYS39 4.9 0.0 1.0 HB2 A:LYS36 5.0 0.0 1.0 N A:CYS34 5.0 0.0 1.0

A.Velyvis, J.Vaynberg, Y.Yang, O.Vinogradova, Y.Zhang, C.Wu, J.Qin. Structural and Functional Insights Into Pinch LIM4 Domain-Mediated Integrin Signaling Nat.Struct.Biol. V. 10 558 2003.
ISSN: ISSN 1072-8368
PubMed: 12794636
DOI: 10.1038/NSB938