Zinc in PDB 1mfs: Dynamical Behavior of the Hiv-1 Nucleocapsid Protein; uc(Nmr), 30 Structures

The binding sites of Zinc atom in the Dynamical Behavior of the Hiv-1 Nucleocapsid Protein; uc(Nmr), 30 Structures (pdb code 1mfs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Dynamical Behavior of the Hiv-1 Nucleocapsid Protein; uc(Nmr), 30 Structures, PDB code: 1mfs:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Dynamical Behavior of the Hiv-1 Nucleocapsid Protein; uc(Nmr), 30 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Dynamical Behavior of the Hiv-1 Nucleocapsid Protein; uc(Nmr), 30 Structures within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn56 b:1.0 occ:1.00 NE2 A:HIS23 2.0 1.0 1.0 SG A:CYS28 2.3 1.0 1.0 SG A:CYS15 2.3 1.0 1.0 SG A:CYS18 2.4 1.0 1.0 HA A:CYS28 3.0 1.0 1.0 HB2 A:CYS28 3.0 1.0 1.0 CE1 A:HIS23 3.0 1.0 1.0 CD2 A:HIS23 3.1 1.0 1.0 CB A:CYS28 3.1 1.0 1.0 HB3 A:CYS18 3.1 1.0 1.0 HE1 A:HIS23 3.2 1.0 1.0 HB3 A:ASN17 3.2 1.0 1.0 H A:CYS18 3.3 1.0 1.0 CB A:CYS15 3.3 1.0 1.0 CB A:CYS18 3.3 1.0 1.0 HB3 A:CYS15 3.4 1.0 1.0 HD2 A:HIS23 3.4 1.0 1.0 HB2 A:CYS15 3.5 1.0 1.0 CA A:CYS28 3.6 1.0 1.0 N A:CYS18 3.9 1.0 1.0 HB3 A:CYS28 4.1 1.0 1.0 ND1 A:HIS23 4.1 1.0 1.0 HA A:ALA25 4.1 1.0 1.0 HD21 A:ASN17 4.2 1.0 1.0 HB2 A:CYS18 4.2 1.0 1.0 CG A:HIS23 4.2 1.0 1.0 CA A:CYS18 4.2 1.0 1.0 CB A:ASN17 4.3 1.0 1.0 H A:ASN17 4.3 1.0 1.0 H A:ALA30 4.4 1.0 1.0 H A:ARG29 4.4 1.0 1.0 H A:GLY19 4.4 1.0 1.0 H A:LYS20 4.5 1.0 1.0 O A:ILE24 4.5 1.0 1.0 N A:CYS28 4.6 1.0 1.0 C A:CYS28 4.6 1.0 1.0 HB2 A:ASN17 4.7 1.0 1.0 CA A:CYS15 4.7 1.0 1.0 HB2 A:LYS20 4.7 1.0 1.0 C A:ASN17 4.7 1.0 1.0 N A:ARG29 4.8 1.0 1.0 HB1 A:ALA30 4.9 1.0 1.0 ND2 A:ASN17 4.9 1.0 1.0 HA A:CYS18 4.9 1.0 1.0 H A:CYS28 5.0 1.0 1.0 CA A:ASN17 5.0 1.0 1.0 HB3 A:LYS20 5.0 1.0 1.0

Zinc binding site 2 out of 2 in the Dynamical Behavior of the Hiv-1 Nucleocapsid Protein; uc(Nmr), 30 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Dynamical Behavior of the Hiv-1 Nucleocapsid Protein; uc(Nmr), 30 Structures within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn57 b:1.0 occ:1.00 NE2 A:HIS44 2.0 1.0 1.0 SG A:CYS49 2.3 1.0 1.0 SG A:CYS39 2.3 1.0 1.0 SG A:CYS36 2.4 1.0 1.0 HB2 A:CYS49 2.8 1.0 1.0 CE1 A:HIS44 3.0 1.0 1.0 CD2 A:HIS44 3.0 1.0 1.0 HB3 A:CYS39 3.1 1.0 1.0 CB A:CYS49 3.1 1.0 1.0 HE1 A:HIS44 3.2 1.0 1.0 HD2 A:HIS44 3.3 1.0 1.0 CB A:CYS36 3.3 1.0 1.0 CB A:CYS39 3.3 1.0 1.0 H A:CYS39 3.4 1.0 1.0 HB3 A:CYS36 3.4 1.0 1.0 HB2 A:CYS36 3.4 1.0 1.0 HA A:CYS49 3.5 1.0 1.0 HB3 A:LYS38 3.5 1.0 1.0 HB2 A:GLU51 3.8 1.0 1.0 CA A:CYS49 3.9 1.0 1.0 N A:CYS39 3.9 1.0 1.0 HB3 A:CYS49 4.0 1.0 1.0 HE2 A:MET46 4.1 1.0 1.0 HB2 A:CYS39 4.1 1.0 1.0 ND1 A:HIS44 4.1 1.0 1.0 HB3 A:LYS41 4.2 1.0 1.0 CG A:HIS44 4.2 1.0 1.0 CA A:CYS39 4.2 1.0 1.0 HA A:MET46 4.4 1.0 1.0 HD2 A:LYS38 4.4 1.0 1.0 H A:GLU51 4.5 1.0 1.0 H A:LYS38 4.5 1.0 1.0 O A:GLN45 4.5 1.0 1.0 H A:LYS41 4.5 1.0 1.0 HB2 A:LYS41 4.6 1.0 1.0 CB A:LYS38 4.6 1.0 1.0 H A:GLY40 4.7 1.0 1.0 CA A:CYS36 4.7 1.0 1.0 C A:LYS38 4.9 1.0 1.0 CB A:GLU51 4.9 1.0 1.0 HD3 A:LYS38 4.9 1.0 1.0 C A:GLN45 4.9 1.0 1.0 CB A:LYS41 4.9 1.0 1.0 C A:CYS49 4.9 1.0 1.0 N A:CYS49 5.0 1.0 1.0 HA A:CYS36 5.0 1.0 1.0 HA A:CYS39 5.0 1.0 1.0 HB3 A:GLU51 5.0 1.0 1.0

B.M.Lee, R.N.De Guzman, B.G.Turner, N.Tjandra, M.F.Summers. Dynamical Behavior of the Hiv-1 Nucleocapsid Protein. J.Mol.Biol. V. 279 633 1998.
ISSN: ISSN 0022-2836
PubMed: 9641983
DOI: 10.1006/JMBI.1998.1766