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Zinc in PDB 1jwb: Structure of the Covalent Acyl-Adenylate Form of the Moeb-Moad Protein Complex

Protein crystallography data

The structure of Structure of the Covalent Acyl-Adenylate Form of the Moeb-Moad Protein Complex, PDB code: 1jwb was solved by M.W.Lake, M.M.Wuebbens, K.V.Rajagopalan, H.Schindelin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.10
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.230, 77.230, 100.545, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 22.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Covalent Acyl-Adenylate Form of the Moeb-Moad Protein Complex (pdb code 1jwb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Covalent Acyl-Adenylate Form of the Moeb-Moad Protein Complex, PDB code: 1jwb:

Zinc binding site 1 out of 1 in 1jwb

Go back to Zinc Binding Sites List in 1jwb
Zinc binding site 1 out of 1 in the Structure of the Covalent Acyl-Adenylate Form of the Moeb-Moad Protein Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Covalent Acyl-Adenylate Form of the Moeb-Moad Protein Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn250

b:42.2
occ:1.00
SG B:CYS172 2.2 32.1 1.0
SG B:CYS244 2.2 40.4 1.0
SG B:CYS247 2.3 36.9 1.0
SG B:CYS175 2.5 38.7 1.0
CB B:CYS244 3.1 49.1 1.0
CB B:CYS172 3.1 30.2 1.0
CB B:CYS247 3.2 44.7 1.0
N B:CYS172 3.4 30.5 1.0
N B:CYS175 3.5 34.3 1.0
CB B:CYS175 3.6 38.4 1.0
N B:CYS247 3.6 46.3 1.0
CA B:CYS172 3.7 34.2 1.0
CA B:CYS175 3.9 37.2 1.0
CA B:CYS247 3.9 46.5 1.0
C B:CYS172 4.1 34.3 1.0
O B:CYS172 4.2 33.1 1.0
C B:ARG174 4.4 35.3 1.0
C B:PRO171 4.5 33.5 1.0
C B:CYS247 4.5 50.5 1.0
CB B:ARG174 4.5 39.5 1.0
CA B:CYS244 4.6 49.7 1.0
N B:ARG174 4.7 37.9 1.0
CA B:PRO171 4.8 35.8 1.0
CA B:ARG174 4.8 38.8 1.0
C B:VAL246 4.8 46.4 1.0
N B:GLY248 4.8 56.2 1.0
CB B:VAL246 4.8 46.5 1.0
N B:TYR173 4.9 34.8 1.0

Reference:

M.W.Lake, M.M.Wuebbens, K.V.Rajagopalan, H.Schindelin. Mechanism of Ubiquitin Activation Revealed By the Structure of A Bacterial Moeb-Moad Complex. Nature V. 414 325 2001.
ISSN: ISSN 0028-0836
PubMed: 11713534
DOI: 10.1038/35104586
Page generated: Wed Dec 16 02:54:10 2020

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