Zinc in PDB 1j6x: Crystal Structure of Helicobacter Pylori Luxs

The structure of Crystal Structure of Helicobacter Pylori Luxs, PDB code: 1j6x was solved by H.A.Lewis, E.B.Furlong, M.G.Bergseid, W.E.Sanderson, S.G.Buchanan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.00 / 2.38
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.140, 71.140, 130.140, 90.00, 90.00, 90.00
R / Rfree (%)	21.9 / 26.4

The binding sites of Zinc atom in the Crystal Structure of Helicobacter Pylori Luxs (pdb code 1j6x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Helicobacter Pylori Luxs, PDB code: 1j6x:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Helicobacter Pylori Luxs


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Helicobacter Pylori Luxs within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn161 b:34.4 occ:1.00 NE2 A:HIS55 2.1 24.2 1.0 NE2 A:HIS59 2.2 19.4 1.0 SG A:CYS122 2.4 26.6 1.0 CE1 A:HIS55 2.8 26.7 1.0 CE1 A:HIS59 3.1 18.9 1.0 CD2 A:HIS55 3.2 24.2 1.0 CD2 A:HIS59 3.2 18.0 1.0 CB A:CYS122 3.4 24.5 1.0 NE2 A:HIS128 3.9 29.4 1.0 CB B:CYS80 3.9 25.4 1.0 CA A:CYS122 4.0 27.0 1.0 ND1 A:HIS55 4.0 27.0 1.0 CG A:HIS55 4.2 26.2 1.0 CE1 A:HIS128 4.2 31.0 1.0 ND1 A:HIS59 4.2 19.2 1.0 N A:GLY123 4.3 25.0 1.0 CG A:HIS59 4.3 20.4 1.0 CE A:MET601 4.5 33.3 1.0 C A:CYS122 4.6 25.1 1.0 OE2 A:GLU58 4.6 28.9 1.0 CA B:CYS80 4.7 25.6 1.0 N B:CYS80 4.7 25.3 1.0 SG B:CYS80 4.8 25.7 1.0 N A:TRP124 4.9 25.3 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Helicobacter Pylori Luxs


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Helicobacter Pylori Luxs within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn161 b:47.7 occ:1.00 NE2 B:HIS59 2.1 27.9 1.0 NE2 B:HIS55 2.2 32.9 1.0 O B:HOH504 2.3 62.4 1.0 SG B:CYS122 2.5 38.6 1.0 CE1 B:HIS59 2.8 29.1 1.0 CE1 B:HIS55 3.0 33.1 1.0 CD2 B:HIS59 3.3 29.5 1.0 CD2 B:HIS55 3.3 32.2 1.0 CB B:CYS122 3.5 38.1 1.0 NE2 B:HIS128 3.9 40.4 1.0 CB A:CYS80 3.9 32.4 1.0 ND1 B:HIS59 4.0 30.2 1.0 CA B:CYS122 4.0 38.9 1.0 ND1 B:HIS55 4.2 31.8 1.0 CE1 B:HIS128 4.2 41.4 1.0 CG B:HIS59 4.3 28.9 1.0 N B:GLY123 4.3 38.3 1.0 CG B:HIS55 4.4 32.8 1.0 OE2 B:GLU58 4.6 30.8 1.0 C B:CYS122 4.7 38.5 1.0 CA A:CYS80 4.7 32.1 1.0 N A:CYS80 4.7 31.9 1.0 CE B:MET501 4.8 44.6 1.0 SG A:CYS80 4.8 32.7 1.0 O B:GLN121 4.9 40.9 1.0

H.A.Lewis, E.B.Furlong, B.Laubert, G.A.Eroshkina, Y.Batiyenko, J.M.Adams, M.G.Bergseid, C.D.Marsh, T.S.Peat, W.E.Sanderson, J.M.Sauder, S.G.Buchanan. A Structural Genomics Approach to the Study of Quorum Sensing: Crystal Structures of Three Luxs Orthologs. Structure V. 9 527 2001.
ISSN: ISSN 0969-2126
PubMed: 11435117
DOI: 10.1016/S0969-2126(01)00613-X