Atomistry » Zinc » PDB 1iml-1jan » 1j2o
Atomistry »
  Zinc »
    PDB 1iml-1jan »
      1j2o »

Zinc in PDB 1j2o: Structure of FLIN2, A Complex Containing the N-Terminal Lim Domain of LMO2 and LDB1-Lid

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of FLIN2, A Complex Containing the N-Terminal Lim Domain of LMO2 and LDB1-Lid (pdb code 1j2o). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of FLIN2, A Complex Containing the N-Terminal Lim Domain of LMO2 and LDB1-Lid, PDB code: 1j2o:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1j2o

Go back to Zinc Binding Sites List in 1j2o
Zinc binding site 1 out of 2 in the Structure of FLIN2, A Complex Containing the N-Terminal Lim Domain of LMO2 and LDB1-Lid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of FLIN2, A Complex Containing the N-Terminal Lim Domain of LMO2 and LDB1-Lid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn115

b:0.0
occ:1.00
ND1 A:HIS27 2.0 0.0 1.0
SG A:CYS9 2.3 0.0 1.0
SG A:CYS6 2.3 0.0 1.0
SG A:CYS30 2.3 0.0 1.0
HB2 A:HIS27 2.7 0.0 1.0
H A:CYS9 2.8 0.0 1.0
CE1 A:HIS27 3.0 0.0 1.0
CG A:HIS27 3.0 0.0 1.0
HB3 A:CYS6 3.1 0.0 1.0
HB3 A:CYS9 3.2 0.0 1.0
HE1 A:HIS27 3.2 0.0 1.0
CB A:CYS6 3.3 0.0 1.0
CB A:CYS9 3.3 0.0 1.0
HB2 A:CYS30 3.3 0.0 1.0
CB A:CYS30 3.4 0.0 1.0
CB A:HIS27 3.4 0.0 1.0
HB3 A:CYS30 3.5 0.0 1.0
N A:CYS9 3.5 0.0 1.0
HB2 A:CYS6 3.6 0.0 1.0
H A:GLN10 3.8 0.0 1.0
CA A:CYS9 4.0 0.0 1.0
HB3 A:HIS27 4.0 0.0 1.0
H A:GLY8 4.1 0.0 1.0
NE2 A:HIS27 4.1 0.0 1.0
CD2 A:HIS27 4.2 0.0 1.0
H A:GLN11 4.2 0.0 1.0
HB2 A:CYS9 4.2 0.0 1.0
HG2 A:GLN11 4.2 0.0 1.0
HA3 A:GLY8 4.4 0.0 1.0
N A:HIS27 4.5 0.0 1.0
N A:GLN10 4.5 0.0 1.0
H A:HIS27 4.5 0.0 1.0
CA A:HIS27 4.5 0.0 1.0
C A:GLY8 4.6 0.0 1.0
C A:CYS9 4.6 0.0 1.0
CA A:CYS6 4.7 0.0 1.0
CA A:CYS30 4.8 0.0 1.0
N A:GLY8 4.8 0.0 1.0
HG3 A:GLN11 4.8 0.0 1.0
CA A:GLY8 4.8 0.0 1.0
HG12 A:ILE13 4.8 0.0 1.0
HA A:CYS9 4.9 0.0 1.0
HA A:TRP26 5.0 0.0 1.0
HA A:CYS30 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1j2o

Go back to Zinc Binding Sites List in 1j2o
Zinc binding site 2 out of 2 in the Structure of FLIN2, A Complex Containing the N-Terminal Lim Domain of LMO2 and LDB1-Lid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of FLIN2, A Complex Containing the N-Terminal Lim Domain of LMO2 and LDB1-Lid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn116

b:0.0
occ:1.00
OD2 A:ASP59 2.0 0.0 1.0
SG A:CYS36 2.2 0.0 1.0
SG A:CYS33 2.3 0.0 1.0
SG A:CYS56 2.3 0.0 1.0
H A:CYS36 2.4 0.0 1.0
CG A:ASP59 2.8 0.0 1.0
HB2 A:CYS33 3.0 0.0 1.0
HB2 A:CYS56 3.1 0.0 1.0
H A:LEU35 3.2 0.0 1.0
HB2 A:CYS36 3.2 0.0 1.0
CB A:CYS36 3.2 0.0 1.0
N A:CYS36 3.3 0.0 1.0
OD1 A:ASP59 3.3 0.0 1.0
CB A:CYS33 3.3 0.0 1.0
CB A:CYS56 3.3 0.0 1.0
H A:ASP34 3.4 0.0 1.0
H A:CYS56 3.4 0.0 1.0
H A:GLY37 3.5 0.0 1.0
HH22 A:ARG95 3.6 0.0 1.0
HG A:CYS38 3.7 0.0 1.0
CA A:CYS36 3.8 0.0 1.0
HB2 A:ASP59 3.9 0.0 1.0
HB3 A:CYS56 4.0 0.0 1.0
N A:LEU35 4.0 0.0 1.0
HB3 A:CYS33 4.0 0.0 1.0
CB A:ASP59 4.0 0.0 1.0
SG A:CYS38 4.0 0.0 1.0
N A:ASP34 4.1 0.0 1.0
HB3 A:CYS36 4.2 0.0 1.0
N A:CYS56 4.2 0.0 1.0
HB3 A:LEU35 4.3 0.0 1.0
H A:CYS38 4.3 0.0 1.0
CA A:CYS33 4.3 0.0 1.0
C A:LEU35 4.3 0.0 1.0
N A:GLY37 4.4 0.0 1.0
HA A:CYS33 4.4 0.0 1.0
CA A:CYS56 4.4 0.0 1.0
H A:ASP59 4.5 0.0 1.0
NH2 A:ARG95 4.6 0.0 1.0
CA A:LEU35 4.6 0.0 1.0
C A:CYS36 4.6 0.0 1.0
HA A:CYS36 4.6 0.0 1.0
C A:CYS33 4.6 0.0 1.0
HB3 A:ASP59 4.8 0.0 1.0
HH21 A:ARG95 4.8 0.0 1.0
N A:ASP59 4.9 0.0 1.0
HB2 A:ARG58 4.9 0.0 1.0
CA A:ASP59 4.9 0.0 1.0
HA A:LEU55 4.9 0.0 1.0
C A:ASP34 5.0 0.0 1.0
CB A:LEU35 5.0 0.0 1.0

Reference:

J.E.Deane, J.P.Mackay, A.H.Kwan, E.Y.Sum, J.E.Visvader, J.M.Matthews. Structural Basis For the Recognition of LDB1 By the N-Terminal Lim Domains of LMO2 and LMO4 Embo J. V. 22 2224 2003.
ISSN: ISSN 0261-4189
PubMed: 12727888
DOI: 10.1093/EMBOJ/CDG196
Page generated: Wed Dec 16 02:53:16 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy