Zinc in PDB 1gud: Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations

The structure of Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations, PDB code: 1gud was solved by U.Magnusson, B.N.Chaudhuri, J.Ko, C.Park, T.A.Jones, S.L.Mowbray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.71 / 1.7
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.229, 64.096, 142.113, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 21.2

The binding sites of Zinc atom in the Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations (pdb code 1gud). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations, PDB code: 1gud:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in the Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1289 b:3.9 occ:1.00 OD1 A:ASP182 2.2 9.1 1.0 O A:HOH2253 2.4 9.2 1.0 O A:HOH2254 2.5 9.0 1.0 O A:HOH2252 2.5 9.5 1.0 OD2 A:ASP182 2.5 10.4 1.0 CG A:ASP182 2.7 9.4 1.0 O A:HOH2168 4.2 20.2 1.0 O A:HOH2171 4.2 31.6 1.0 CB A:ASP182 4.2 8.9 1.0 OD1 A:ASN186 4.3 8.3 1.0 ND2 A:ASN186 4.6 6.7 1.0 O A:HOH2170 4.9 23.6 1.0 CG A:ASN186 4.9 7.9 1.0 O A:HOH2169 4.9 34.0 1.0 CA A:ASP182 5.0 9.1 1.0

Zinc binding site 2 out of 8 in the Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1290 b:15.9 occ:1.00 O A:HOH2255 2.3 14.1 1.0 OE2 A:GLU157 2.4 22.2 1.0 OE1 A:GLU157 2.5 18.1 1.0 CD A:GLU157 2.8 16.8 1.0 CG A:GLU157 4.3 15.3 1.0 O A:HOH2149 4.5 33.7 1.0 O A:HOH2150 4.6 28.9 1.0

Zinc binding site 3 out of 8 in the Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1291 b:8.8 occ:1.00 OE1 A:GLU3 2.1 22.7 1.0 OD2 A:ASP35 2.1 9.6 1.0 OD1 B:ASP18 2.2 11.9 1.0 OD1 A:ASP35 2.7 9.8 1.0 CG A:ASP35 2.8 9.7 1.0 CD A:GLU3 3.0 27.1 1.0 CG B:ASP18 3.1 13.7 1.0 OD2 B:ASP18 3.2 16.4 1.0 OE2 A:GLU3 3.3 35.9 1.0 CB A:ASP35 4.3 8.0 1.0 NZ B:LYS21 4.4 16.5 1.0 CG A:GLU3 4.4 23.3 1.0 CB B:ASP18 4.5 12.2 1.0 OH A:TYR60 4.6 10.0 1.0 O B:PRO14 4.8 12.6 1.0 O B:HOH2022 4.9 26.8 1.0 CA B:ASP18 5.0 10.2 1.0

Zinc binding site 4 out of 8 in the Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1292 b:14.3 occ:1.00 O A:GLN288 2.1 25.3 1.0 OXT A:GLN288 2.1 18.8 1.0 O A:HOH2256 2.4 23.9 1.0 O A:HOH2257 2.5 7.1 1.0 C A:GLN288 2.6 20.8 1.0 OE2 A:GLU237 3.5 34.6 1.0 CA A:GLN288 4.1 19.9 1.0 CG A:GLN288 4.4 22.8 1.0 CB A:GLN288 4.6 21.1 1.0 CD A:GLU237 4.6 31.0 1.0 NH1 A:ARG233 4.6 16.0 1.0 CG1 A:VAL286 4.8 13.8 1.0 O A:HOH2208 4.8 20.5 1.0 CG A:GLU237 4.8 24.3 1.0 N A:GLN288 4.8 16.9 1.0

Zinc binding site 5 out of 8 in the Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1289 b:4.5 occ:1.00 OE2 B:GLU264 2.2 5.9 1.0 O B:HOH2229 2.3 10.9 1.0 O B:HOH2230 2.4 8.3 1.0 O B:HOH2228 2.5 7.0 1.0 CD B:GLU264 3.2 9.0 1.0 OE1 B:GLU264 3.5 10.1 1.0 O B:HOH2095 4.1 12.4 1.0 NZ B:LYS61 4.2 20.7 1.0 O B:HOH2113 4.3 25.2 1.0 O B:GLU264 4.3 6.5 1.0 CG B:GLU264 4.6 8.0 1.0 CE B:LYS61 4.7 22.1 1.0 O B:HOH2199 4.8 10.1 1.0

Zinc binding site 6 out of 8 in the Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1290 b:8.8 occ:1.00 O B:ALA1 2.2 13.3 1.0 O B:HOH2231 2.2 24.8 1.0 O B:HOH2234 2.2 9.7 1.0 O B:HOH2233 2.4 16.0 1.0 O B:HOH2232 2.4 10.8 1.0 CA B:ALA1 2.9 16.4 1.0 C B:ALA1 3.0 13.6 1.0 CB B:ALA1 3.5 19.3 1.0 N B:ALA1 4.0 16.7 1.0 O B:HOH2003 4.2 14.1 1.0 CG B:GLU3 4.2 15.2 1.0 N B:ALA2 4.3 11.7 1.0 OE1 B:GLU3 4.3 21.4 1.0 O B:HOH2001 4.5 19.0 1.0 CD B:GLU3 4.8 21.9 1.0

Zinc binding site 7 out of 8 in the Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1291 b:12.1 occ:1.00 OE2 B:GLU132 1.7 20.0 1.0 O B:HOH2236 2.2 17.7 1.0 CD B:GLU132 2.3 27.1 1.0 O B:HOH2237 2.3 16.1 1.0 O B:HOH2235 2.4 7.6 1.0 OE1 B:GLU132 2.5 37.8 1.0 CG B:GLU132 3.5 25.2 1.0 CB B:GLU132 4.0 24.5 1.0 O B:LEU129 4.1 18.8 1.0 NZ B:LYS195 4.7 22.7 1.0 CD B:LYS195 4.7 24.0 1.0 O B:GLY133 4.7 18.6 1.0

Zinc binding site 8 out of 8 in the Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Hinge-Bending Motion of D-Allose Binding Protein From Escherichia Coli: Three Open Conformations within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1292 b:32.1 occ:1.00 O B:HOH2240 2.3 2.0 1.0 O B:HOH2239 2.3 33.4 1.0 O B:HOH2238 2.3 28.9 1.0 OE2 B:GLU53 2.7 15.7 1.0 OE1 B:GLN50 3.0 27.5 1.0 CD B:GLU53 3.2 19.8 1.0 OE1 B:GLU53 3.2 20.5 1.0 CD B:GLN50 4.1 21.2 1.0 CG B:GLU53 4.4 12.6 1.0 NE2 B:GLN50 4.4 23.7 1.0 NE2 B:GLN46 4.8 16.9 1.0 O B:HOH2072 5.0 14.9 1.0

B.N.Chaudhuri, J.Ko, C.Park, T.A.Jones, S.L.Mowbray. Structure of D-Allose Binding Protein From Escherichia Coli Bound to D-Allose at 1.8 A Resolution J.Mol.Biol. V. 286 1519 1999.
ISSN: ISSN 0022-2836
PubMed: 10064713
DOI: 10.1006/JMBI.1999.2571