Zinc in PDB 1gdc: Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain

The binding sites of Zinc atom in the Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain (pdb code 1gdc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain, PDB code: 1gdc:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn73 b:0.0 occ:1.00 SG A:CYS22 2.3 0.0 1.0 SG A:CYS5 2.3 0.0 1.0 SG A:CYS2 2.3 0.0 1.0 SG A:CYS19 2.3 0.0 1.0 H A:CYS5 3.1 0.0 1.0 HB2 A:CYS22 3.2 0.0 1.0 H A:CYS19 3.2 0.0 1.0 CB A:CYS22 3.4 0.0 1.0 HB A:VAL4 3.4 0.0 1.0 HB3 A:CYS19 3.5 0.0 1.0 CB A:CYS19 3.5 0.0 1.0 CB A:CYS2 3.6 0.0 1.0 H A:CYS22 3.6 0.0 1.0 CB A:CYS5 3.7 0.0 1.0 HB2 A:CYS2 3.7 0.0 1.0 HB3 A:CYS2 3.8 0.0 1.0 HB3 A:CYS5 3.9 0.0 1.0 N A:CYS5 3.9 0.0 1.0 N A:CYS19 4.1 0.0 1.0 HB3 A:ASP7 4.1 0.0 1.0 HB3 A:CYS22 4.2 0.0 1.0 CA A:CYS5 4.2 0.0 1.0 N A:CYS22 4.3 0.0 1.0 CA A:CYS19 4.3 0.0 1.0 CA A:CYS22 4.3 0.0 1.0 HB2 A:SER21 4.4 0.0 1.0 HB2 A:CYS19 4.4 0.0 1.0 CB A:VAL4 4.5 0.0 1.0 HB2 A:CYS5 4.6 0.0 1.0 HA A:CYS22 4.6 0.0 1.0 HG22 A:THR18 4.6 0.0 1.0 H A:VAL4 4.7 0.0 1.0 C A:CYS5 4.7 0.0 1.0 HB A:THR18 4.7 0.0 1.0 HG22 A:VAL4 4.8 0.0 1.0 HA A:THR18 4.9 0.0 1.0 HB2 A:ASP7 4.9 0.0 1.0 H A:ASP7 5.0 0.0 1.0 CA A:CYS2 5.0 0.0 1.0 HG23 A:VAL4 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn74 b:0.0 occ:1.00 SG A:CYS54 2.3 0.0 1.0 SG A:CYS57 2.3 0.0 1.0 SG A:CYS38 2.3 0.0 1.0 SG A:CYS44 2.3 0.0 1.0 H A:CYS57 3.3 0.0 1.0 CB A:CYS54 3.4 0.0 1.0 HB2 A:CYS38 3.4 0.0 1.0 CB A:CYS38 3.4 0.0 1.0 HB3 A:CYS54 3.4 0.0 1.0 HB2 A:CYS54 3.5 0.0 1.0 H A:CYS44 3.5 0.0 1.0 HB2 A:CYS57 3.6 0.0 1.0 CB A:CYS57 3.6 0.0 1.0 HB3 A:ALA56 3.6 0.0 1.0 CB A:CYS44 3.7 0.0 1.0 HB3 A:CYS38 3.8 0.0 1.0 HB2 A:CYS44 3.8 0.0 1.0 H A:ASP43 3.9 0.0 1.0 HA A:ASN42 4.1 0.0 1.0 N A:CYS57 4.1 0.0 1.0 HD11 A:ILE46 4.1 0.0 1.0 N A:CYS44 4.2 0.0 1.0 CA A:CYS57 4.3 0.0 1.0 HD13 A:ILE46 4.3 0.0 1.0 CA A:CYS44 4.4 0.0 1.0 OD1 A:ASP43 4.4 0.0 1.0 HB3 A:CYS57 4.5 0.0 1.0 H A:ALA56 4.5 0.0 1.0 H A:ASN42 4.5 0.0 1.0 HB3 A:CYS44 4.5 0.0 1.0 O A:LEU37 4.6 0.0 1.0 HA A:CYS57 4.6 0.0 1.0 O A:CYS44 4.6 0.0 1.0 CB A:ALA56 4.7 0.0 1.0 CD1 A:ILE46 4.8 0.0 1.0 CA A:CYS38 4.8 0.0 1.0 N A:ASP43 4.8 0.0 1.0 CA A:CYS54 4.9 0.0 1.0 C A:CYS44 4.9 0.0 1.0

H.Baumann, K.Paulsen, H.Kovacs, H.Berglund, A.P.Wright, J.A.Gustafsson, T.Hard. Refined Solution Structure of the Glucocorticoid Receptor Dna-Binding Domain. Biochemistry V. 32 13463 1993.
ISSN: ISSN 0006-2960
PubMed: 8257681
DOI: 10.1021/BI00212A011