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Zinc in PDB 1fn9: Crystal Structure of the Reovirus Outer Capsid Protein Sigma 3

Protein crystallography data

The structure of Crystal Structure of the Reovirus Outer Capsid Protein Sigma 3, PDB code: 1fn9 was solved by A.M.Olland, J.Jane-Valbuena, L.A.Schiff, M.L.Nibert, S.C.Harrison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 500.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 77.898, 82.564, 132.264, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 19.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Reovirus Outer Capsid Protein Sigma 3 (pdb code 1fn9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Reovirus Outer Capsid Protein Sigma 3, PDB code: 1fn9:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1fn9

Go back to Zinc Binding Sites List in 1fn9
Zinc binding site 1 out of 2 in the Crystal Structure of the Reovirus Outer Capsid Protein Sigma 3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Reovirus Outer Capsid Protein Sigma 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:11.8
occ:1.00
NE2 A:HIS71 2.2 9.1 1.0
SG A:CYS73 2.3 10.7 1.0
SG A:CYS51 2.4 9.1 1.0
SG A:CYS54 2.4 9.1 1.0
CB A:CYS73 3.1 11.3 1.0
CB A:CYS51 3.1 7.1 1.0
CE1 A:HIS71 3.2 9.0 1.0
CD2 A:HIS71 3.2 7.6 1.0
CB A:CYS54 3.2 8.6 1.0
N A:CYS54 3.6 8.0 1.0
CA A:CYS73 3.8 11.9 1.0
CA A:CYS54 4.0 8.1 1.0
C A:HIS53 4.2 9.5 1.0
CB A:HIS53 4.3 12.9 1.0
ND1 A:HIS71 4.3 9.5 1.0
CG A:HIS71 4.4 7.7 1.0
CA A:CYS51 4.5 7.8 1.0
CA A:HIS53 4.6 10.7 1.0
N A:HIS53 4.6 9.8 1.0
O A:CYS51 4.7 7.3 1.0
O A:HOH1021 4.7 11.7 1.0
C A:CYS51 4.8 7.3 1.0
C A:CYS73 4.8 12.5 1.0
N A:CYS73 4.9 11.6 1.0
C A:CYS54 4.9 7.8 1.0
O A:HIS53 5.0 11.0 1.0
N A:ASN74 5.0 11.9 1.0

Zinc binding site 2 out of 2 in 1fn9

Go back to Zinc Binding Sites List in 1fn9
Zinc binding site 2 out of 2 in the Crystal Structure of the Reovirus Outer Capsid Protein Sigma 3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Reovirus Outer Capsid Protein Sigma 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1002

b:13.6
occ:1.00
NE2 B:HIS71 2.2 12.7 1.0
SG B:CYS54 2.4 11.1 1.0
SG B:CYS51 2.4 10.9 1.0
SG B:CYS73 2.4 11.3 1.0
CB B:CYS73 3.1 13.0 1.0
CD2 B:HIS71 3.1 10.2 1.0
CE1 B:HIS71 3.2 11.4 1.0
CB B:CYS51 3.2 10.6 1.0
CB B:CYS54 3.2 9.4 1.0
O B:HOH1069 3.5 49.3 1.0
N B:CYS54 3.6 9.4 1.0
CA B:CYS73 3.8 11.8 1.0
CA B:CYS54 4.0 9.9 1.0
C B:HIS53 4.2 11.2 1.0
ND1 B:HIS71 4.3 10.9 1.0
CG B:HIS71 4.3 11.5 1.0
O B:HOH1221 4.3 31.7 1.0
CB B:HIS53 4.3 14.2 1.0
O B:HOH1016 4.6 13.8 1.0
CA B:CYS51 4.6 11.3 1.0
CA B:HIS53 4.6 11.6 1.0
N B:HIS53 4.7 11.6 1.0
C B:CYS73 4.7 12.2 1.0
N B:CYS73 4.8 11.7 1.0
O B:CYS51 4.8 10.6 1.0
C B:CYS51 4.8 10.8 1.0
C B:CYS54 4.9 8.8 1.0
N B:ASN74 4.9 11.9 1.0
O B:HIS53 5.0 11.4 1.0

Reference:

A.M.Olland, J.Jane-Valbuena, L.A.Schiff, M.L.Nibert, S.C.Harrison. Structure of the Reovirus Outer Capsid and Dsrna-Binding Protein SIGMA3 at 1.8 A Resolution. Embo J. V. 20 979 2001.
ISSN: ISSN 0261-4189
PubMed: 11230122
DOI: 10.1093/EMBOJ/20.5.979
Page generated: Fri Sep 25 21:35:14 2020
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