Atomistry » Zinc » PDB 1f6u-1fp0 » 1fio
Atomistry »
  Zinc »
    PDB 1f6u-1fp0 »
      1fio »

Zinc in PDB 1fio: Crystal Structure of Yeast T-Snare Protein SSO1

Protein crystallography data

The structure of Crystal Structure of Yeast T-Snare Protein SSO1, PDB code: 1fio was solved by M.Munson, X.Chen, A.E.Cocina, S.M.Schultz, F.M.Hughson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.517, 49.855, 113.840, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 26.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Yeast T-Snare Protein SSO1 (pdb code 1fio). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Yeast T-Snare Protein SSO1, PDB code: 1fio:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1fio

Go back to Zinc Binding Sites List in 1fio
Zinc binding site 1 out of 2 in the Crystal Structure of Yeast T-Snare Protein SSO1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Yeast T-Snare Protein SSO1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:11.6
occ:0.72
N A:HIS31 2.0 24.9 1.0
N A:MET30 2.1 15.7 1.0
ND1 A:HIS31 2.2 18.4 1.0
C A:MET30 2.8 23.8 1.0
CA A:MET30 2.9 25.1 1.0
CA A:HIS31 3.0 27.5 1.0
CG A:HIS31 3.0 22.0 1.0
CB A:HIS31 3.1 24.1 1.0
CE1 A:HIS31 3.3 22.1 1.0
N A:ASP32 3.8 29.9 1.0
O A:MET30 3.9 17.2 1.0
C A:HIS31 3.9 30.4 1.0
CB A:MET30 4.0 39.9 1.0
CD2 A:HIS31 4.2 21.9 1.0
NE2 A:HIS31 4.3 24.6 1.0
O A:HOH313 4.7 26.5 1.0

Zinc binding site 2 out of 2 in 1fio

Go back to Zinc Binding Sites List in 1fio
Zinc binding site 2 out of 2 in the Crystal Structure of Yeast T-Snare Protein SSO1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Yeast T-Snare Protein SSO1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:29.6
occ:0.70
ND1 A:HIS78 2.1 46.5 1.0
ND1 A:HIS75 2.1 48.8 1.0
CE1 A:HIS78 3.0 47.9 1.0
CE1 A:HIS75 3.0 50.5 1.0
CG A:HIS78 3.1 44.4 1.0
CG A:HIS75 3.2 47.4 1.0
CB A:HIS78 3.4 39.2 1.0
CA A:HIS75 3.5 35.8 1.0
CB A:HIS75 3.5 41.3 1.0
NE2 A:HIS78 4.2 47.5 1.0
NE2 A:HIS75 4.2 50.7 1.0
CD2 A:HIS78 4.2 46.1 1.0
CD2 A:HIS75 4.3 49.2 1.0
O A:HIS75 4.4 30.8 1.0
N A:HIS75 4.5 35.0 1.0
C A:HIS75 4.5 32.3 1.0
O A:SER74 4.6 38.7 1.0
C A:SER74 4.9 39.5 1.0
CA A:HIS78 4.9 34.7 1.0

Reference:

M.Munson, X.Chen, A.E.Cocina, S.M.Schultz, F.M.Hughson. Interactions Within the Yeast T-Snare SSO1P That Control Snare Complex Assembly. Nat.Struct.Biol. V. 7 894 2000.
ISSN: ISSN 1072-8368
PubMed: 11017200
DOI: 10.1038/79659
Page generated: Wed Dec 16 02:49:11 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy