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Zinc in PDB 1f6u: uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition (pdb code 1f6u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition, PDB code: 1f6u:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1f6u

Go back to Zinc Binding Sites List in 1f6u
Zinc binding site 1 out of 2 in the uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn128

b:0.0
occ:1.00
NE2 A:HIS23 2.1 0.0 1.0
SG A:CYS28 2.3 0.0 1.0
SG A:CYS18 2.4 0.0 1.0
SG A:CYS15 2.4 0.0 1.0
HB2 A:CYS28 2.9 0.0 1.0
CD2 A:HIS23 3.0 0.0 1.0
HB3 A:CYS18 3.1 0.0 1.0
CE1 A:HIS23 3.1 0.0 1.0
CB A:CYS28 3.1 0.0 1.0
HB2 A:CYS15 3.1 0.0 1.0
CB A:CYS15 3.2 0.0 1.0
HA A:CYS28 3.2 0.0 1.0
HD2 A:HIS23 3.2 0.0 1.0
H A:CYS18 3.2 0.0 1.0
HB3 A:CYS15 3.2 0.0 1.0
CB A:CYS18 3.3 0.0 1.0
HE1 A:HIS23 3.4 0.0 1.0
HD21 A:ASN17 3.4 0.0 1.0
CA A:CYS28 3.7 0.0 1.0
HA A:ALA25 3.7 0.0 1.0
HB3 A:ASN17 3.8 0.0 1.0
H A:ARG29 3.9 0.0 1.0
N A:CYS18 4.0 0.0 1.0
HB3 A:CYS28 4.0 0.0 1.0
CG A:HIS23 4.1 0.0 1.0
ND1 A:HIS23 4.1 0.0 1.0
HB2 A:CYS18 4.1 0.0 1.0
CA A:CYS18 4.3 0.0 1.0
ND2 A:ASN17 4.3 0.0 1.0
H A:GLY19 4.4 0.0 1.0
HB3 A:LYS20 4.5 0.0 1.0
N A:ARG29 4.6 0.0 1.0
HB1 A:ALA30 4.6 0.0 1.0
N A:ALA25 4.6 0.0 1.0
C A:ILE24 4.6 0.0 1.0
H A:ASN17 4.6 0.0 1.0
CA A:CYS15 4.6 0.0 1.0
O A:ILE24 4.6 0.0 1.0
CA A:ALA25 4.6 0.0 1.0
C A:CYS28 4.7 0.0 1.0
H A:ALA30 4.7 0.0 1.0
HB2 A:LYS20 4.7 0.0 1.0
HD22 A:ASN17 4.8 0.0 1.0
CB A:ASN17 4.8 0.0 1.0
N A:CYS28 4.8 0.0 1.0
H A:LYS20 4.8 0.0 1.0
HA A:CYS15 4.9 0.0 1.0
HG2 A:ARG29 4.9 0.0 1.0
HA A:ILE24 4.9 0.0 1.0
N A:GLY19 5.0 0.0 1.0
H A:ALA25 5.0 0.0 1.0
HB2 A:ALA25 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1f6u

Go back to Zinc Binding Sites List in 1f6u
Zinc binding site 2 out of 2 in the uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn149

b:0.0
occ:1.00
NE2 A:HIS44 2.1 0.0 1.0
SG A:CYS49 2.3 0.0 1.0
SG A:CYS36 2.3 0.0 1.0
SG A:CYS39 2.4 0.0 1.0
HA A:CYS49 2.6 0.0 1.0
CE1 A:HIS44 2.9 0.0 1.0
HB3 A:CYS36 3.0 0.0 1.0
CB A:CYS36 3.0 0.0 1.0
HB2 A:CYS36 3.0 0.0 1.0
HE1 A:HIS44 3.1 0.0 1.0
CB A:CYS49 3.1 0.0 1.0
HB2 A:CYS49 3.1 0.0 1.0
CD2 A:HIS44 3.1 0.0 1.0
HB3 A:CYS39 3.2 0.0 1.0
H A:THR50 3.3 0.0 1.0
CA A:CYS49 3.3 0.0 1.0
CB A:CYS39 3.4 0.0 1.0
HD2 A:HIS44 3.5 0.0 1.0
H A:CYS39 3.6 0.0 1.0
HB3 A:LYS38 4.0 0.0 1.0
HA A:MET46 4.0 0.0 1.0
HB2 A:LYS41 4.1 0.0 1.0
N A:THR50 4.1 0.0 1.0
ND1 A:HIS44 4.1 0.0 1.0
HB3 A:CYS49 4.1 0.0 1.0
HB2 A:CYS39 4.1 0.0 1.0
CG A:HIS44 4.2 0.0 1.0
N A:CYS39 4.2 0.0 1.0
H A:GLU51 4.2 0.0 1.0
C A:CYS49 4.3 0.0 1.0
H A:LYS41 4.3 0.0 1.0
O A:GLN45 4.4 0.0 1.0
H A:GLY40 4.4 0.0 1.0
CA A:CYS39 4.4 0.0 1.0
N A:CYS49 4.4 0.0 1.0
CA A:CYS36 4.5 0.0 1.0
HG21 A:THR50 4.6 0.0 1.0
HD2 A:LYS38 4.6 0.0 1.0
H A:LYS38 4.6 0.0 1.0
HA A:CYS36 4.8 0.0 1.0
OG1 A:THR50 4.8 0.0 1.0
C A:GLN45 4.9 0.0 1.0
H A:CYS49 4.9 0.0 1.0
HD2 A:LYS41 4.9 0.0 1.0
HB3 A:LYS41 4.9 0.0 1.0
HD1 A:HIS44 4.9 0.0 1.0
HG1 A:THR50 5.0 0.0 1.0
CB A:LYS41 5.0 0.0 1.0

Reference:

G.K.Amarasinghe, R.N.De Guzman, R.B.Turner, K.J.Chancellor, Z.R.Wu, M.F.Summers. uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition. J.Mol.Biol. V. 301 491 2000.
ISSN: ISSN 0022-2836
PubMed: 10926523
DOI: 10.1006/JMBI.2000.3979
Page generated: Wed Dec 16 02:49:10 2020

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