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Zinc in PDB 1dwf: Study on Radiation Damage on A Cryocooled Crystal. Part 2: Structure After Irradiation with 9.1*10E15 Photons/MM2

Enzymatic activity of Study on Radiation Damage on A Cryocooled Crystal. Part 2: Structure After Irradiation with 9.1*10E15 Photons/MM2

All present enzymatic activity of Study on Radiation Damage on A Cryocooled Crystal. Part 2: Structure After Irradiation with 9.1*10E15 Photons/MM2:
3.2.1.147;

Protein crystallography data

The structure of Study on Radiation Damage on A Cryocooled Crystal. Part 2: Structure After Irradiation with 9.1*10E15 Photons/MM2, PDB code: 1dwf was solved by W.P.Burmeister, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.40 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 134.300, 136.400, 80.300, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 18

Zinc Binding Sites:

The binding sites of Zinc atom in the Study on Radiation Damage on A Cryocooled Crystal. Part 2: Structure After Irradiation with 9.1*10E15 Photons/MM2 (pdb code 1dwf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Study on Radiation Damage on A Cryocooled Crystal. Part 2: Structure After Irradiation with 9.1*10E15 Photons/MM2, PDB code: 1dwf:

Zinc binding site 1 out of 1 in 1dwf

Go back to Zinc Binding Sites List in 1dwf
Zinc binding site 1 out of 1 in the Study on Radiation Damage on A Cryocooled Crystal. Part 2: Structure After Irradiation with 9.1*10E15 Photons/MM2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Study on Radiation Damage on A Cryocooled Crystal. Part 2: Structure After Irradiation with 9.1*10E15 Photons/MM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn1524

b:34.4
occ:1.00
 OD2 M:ASP70 2.0 20.6 1.0
NE2 M:HIS56 2.0 10.3 1.0
CG M:ASP70 2.8 14.2 1.0
OD1 M:ASP70 2.9 9.5 1.0
CE1 M:HIS56 3.0 11.9 1.0
CD2 M:HIS56 3.1 8.5 1.0
O M:HOH2125 3.6 23.7 1.0
ND1 M:HIS56 4.1 11.2 1.0
O M:HOH2078 4.1 45.2 1.0
CB M:ASP70 4.2 12.2 1.0
CG M:HIS56 4.2 10.4 1.0
ND2 M:ASN68 4.4 14.8 1.0
OD1 M:ASN68 4.8 12.9 1.0
CG M:ASN68 4.9 11.5 1.0

Reference:

W.P.Burmeister, W.P.Burmeister. N/A N/A.
ISSN: ISSN 0907-4449
PubMed: 10713520
DOI: 10.1107/S0907444999016261
Page generated: Sat Oct 12 23:53:30 2024

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