Atomistry » Zinc » PDB 1caq-1co4 » 1cit
Atomistry »
  Zinc »
    PDB 1caq-1co4 »
      1cit »

Zinc in PDB 1cit: Dna-Binding Mechanism of the Monomeric Orphan Nuclear Receptor Ngfi-B

Protein crystallography data

The structure of Dna-Binding Mechanism of the Monomeric Orphan Nuclear Receptor Ngfi-B, PDB code: 1cit was solved by G.Meinke, P.B.Sigler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.00 / 2.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.420, 34.240, 56.260, 90.00, 109.13, 90.00
R / Rfree (%) 21.9 / 29.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Dna-Binding Mechanism of the Monomeric Orphan Nuclear Receptor Ngfi-B (pdb code 1cit). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Dna-Binding Mechanism of the Monomeric Orphan Nuclear Receptor Ngfi-B, PDB code: 1cit:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1cit

Go back to Zinc Binding Sites List in 1cit
Zinc binding site 1 out of 2 in the Dna-Binding Mechanism of the Monomeric Orphan Nuclear Receptor Ngfi-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Dna-Binding Mechanism of the Monomeric Orphan Nuclear Receptor Ngfi-B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn398

b:36.6
occ:1.00
SG A:CYS252 2.5 34.1 1.0
SG A:CYS249 2.6 34.9 1.0
SG A:CYS235 2.6 32.4 1.0
SG A:CYS232 2.7 33.8 1.0
CB A:CYS235 3.1 32.4 1.0
N A:CYS235 3.4 32.5 1.0
CB A:CYS252 3.4 26.8 1.0
CB A:CYS232 3.6 33.7 1.0
CA A:CYS235 3.8 35.7 1.0
CB A:CYS249 3.8 30.3 1.0
NH1 A:ARG281 3.9 21.9 1.0
N A:CYS252 4.0 26.1 1.0
CB A:ASP237 4.2 43.1 1.0
CB A:VAL234 4.3 32.5 1.0
CA A:CYS252 4.3 25.1 1.0
N A:GLY236 4.3 39.6 1.0
N A:CYS249 4.3 27.8 1.0
C A:CYS235 4.5 37.6 1.0
C A:VAL234 4.5 32.7 1.0
N A:ASP237 4.5 41.1 1.0
CZ A:ARG281 4.6 28.6 1.0
CA A:CYS249 4.7 25.7 1.0
CA A:VAL234 4.8 30.7 1.0
CD A:ARG281 4.8 25.5 1.0
NH2 A:ARG288 4.8 20.0 1.0
N A:VAL234 4.9 33.4 1.0

Zinc binding site 2 out of 2 in 1cit

Go back to Zinc Binding Sites List in 1cit
Zinc binding site 2 out of 2 in the Dna-Binding Mechanism of the Monomeric Orphan Nuclear Receptor Ngfi-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Dna-Binding Mechanism of the Monomeric Orphan Nuclear Receptor Ngfi-B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn399

b:39.8
occ:1.00
SG A:CYS274 2.6 39.5 1.0
SG A:CYS287 2.6 35.6 1.0
SG A:CYS268 2.6 32.3 1.0
SG A:CYS284 2.6 44.2 1.0
CB A:CYS268 3.2 35.3 1.0
CB A:CYS287 3.5 32.6 1.0
CB A:CYS274 3.5 34.9 1.0
CB A:CYS284 3.5 36.2 1.0
CA A:CYS268 4.0 35.9 1.0
N A:CYS274 4.2 35.5 1.0
N A:CYS287 4.2 27.6 1.0
CA A:LYS272 4.3 40.8 1.0
CA A:CYS287 4.4 31.1 1.0
N A:LYS272 4.4 42.6 1.0
N A:ASP273 4.5 41.8 1.0
CA A:CYS274 4.5 35.1 1.0
CD2 A:PHE286 4.6 24.7 1.0
C A:CYS268 4.7 39.1 1.0
C A:LYS272 4.7 43.5 1.0
N A:LEU269 4.7 38.8 1.0
CB A:ALA270 4.8 32.8 1.0
N A:ALA270 4.9 36.4 1.0
CB A:PHE286 4.9 24.6 1.0
CA A:CYS284 4.9 40.4 1.0

Reference:

G.Meinke, P.B.Sigler. Dna-Binding Mechanism of the Monomeric Orphan Nuclear Receptor Ngfi-B. Nat.Struct.Biol. V. 6 471 1999.
ISSN: ISSN 1072-8368
PubMed: 10331876
DOI: 10.1038/8276
Page generated: Wed Dec 16 02:46:31 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy