Zinc in PDB 8smz: Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 4)

Enzymatic activity of Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 4)

Zinc Binding Sites:

Zinc binding site 1 out of 2 in 8smz

Zinc Binding Sites List in 8smz

Zinc binding site 1 out of 2 in the Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 4)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 4) within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn301 b:81.8 occ:1.00 ND1 K:HIS33 2.0 56.0 1.0 SG K:CYS31 2.3 54.6 1.0 SG K:CYS51 2.3 53.5 1.0 SG K:CYS54 2.3 59.6 1.0 CE1 K:HIS33 2.6 56.0 1.0 CG K:HIS33 3.2 56.0 1.0 CB K:CYS51 3.3 53.5 1.0 CB K:CYS31 3.5 54.6 1.0 CB K:CYS54 3.6 59.6 1.0 N K:CYS54 3.6 59.6 1.0 NE2 K:HIS33 3.9 56.0 1.0 CB K:HIS33 3.9 56.0 1.0 CA K:CYS54 4.1 59.6 1.0 CD2 K:HIS33 4.1 56.0 1.0 CB K:PHE53 4.2 56.6 1.0 CB K:ARG56 4.6 47.6 1.0 C K:PHE53 4.6 56.6 1.0 C K:CYS54 4.6 59.6 1.0 CA K:CYS51 4.7 53.5 1.0 N K:ARG55 4.8 62.1 1.0 O K:CYS31 4.8 54.6 1.0 CA K:PHE53 4.8 56.6 1.0 CA K:CYS31 4.8 54.6 1.0 N K:PHE53 4.8 56.6 1.0 N K:ARG56 4.9 47.6 1.0 CD1 K:LEU29 4.9 48.5 1.0 C K:CYS31 4.9 54.6 1.0

Zinc binding site 2 out of 2 in 8smz

Zinc Binding Sites List in 8smz

Zinc binding site 2 out of 2 in the Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 4)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 4) within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn302 b:117.7 occ:1.00 SG K:CYS16 2.3 61.1 1.0 SG K:CYS36 2.3 55.4 1.0 SG K:CYS19 2.3 66.1 1.0 SG K:CYS39 2.3 56.0 1.0 CB K:CYS36 3.0 55.4 1.0 CB K:CYS16 3.2 61.1 1.0 CB K:CYS19 3.3 66.1 1.0 N K:CYS19 3.8 66.1 1.0 N K:CYS36 3.8 55.4 1.0 CB K:CYS39 3.9 56.0 1.0 CA K:CYS36 4.0 55.4 1.0 CA K:CYS19 4.1 66.1 1.0 CB K:ILE18 4.4 59.6 1.0 CA K:CYS16 4.7 61.1 1.0 C K:ILE18 4.7 59.6 1.0 C K:CYS19 4.9 66.1 1.0 CA K:ILE18 5.0 59.6 1.0 N K:ILE18 5.0 59.6 1.0

Reference: