Zinc in PDB 9f2a: Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 2 (Composite Map)

All present enzymatic activity of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 2 (Composite Map):
2.7.7.7; 3.1.11.1;

The structure of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 2 (Composite Map) also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Zinc atom in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 2 (Composite Map) (pdb code 9f2a). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 2 (Composite Map), PDB code: 9f2a:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 2 (Composite Map)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 2 (Composite Map) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1301 b:120.2 occ:1.00 SG B:CYS709 2.3 87.0 1.0 SG B:CYS718 2.3 73.4 1.0 SG B:CYS721 2.3 82.7 1.0 SG B:CYS706 2.3 71.4 1.0 CB B:CYS706 3.3 60.0 1.0 CB B:CYS718 3.4 56.0 1.0 CB B:CYS721 3.4 75.6 1.0 CB B:CYS709 3.4 72.4 1.0 N B:CYS721 4.0 77.0 1.0 N B:CYS709 4.0 74.5 1.0 CA B:CYS709 4.3 72.5 1.0 CA B:CYS721 4.3 75.0 1.0 OG1 B:THR723 4.5 61.9 1.0 CA B:CYS706 4.7 56.5 1.0 CA B:CYS718 4.8 55.6 1.0 CB B:HIS711 4.8 50.5 1.0 C B:CYS709 4.9 72.2 1.0 N B:GLY710 4.9 62.3 1.0

Zinc binding site 2 out of 3 in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 2 (Composite Map)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 2 (Composite Map) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1302 b:118.3 occ:1.00 SG B:CYS731 2.3 89.2 1.0 SG B:CYS734 2.3 76.7 1.0 SG B:CYS750 2.3 82.8 1.0 SG B:CYS753 2.3 98.0 1.0 CB B:CYS731 3.2 66.9 1.0 CB B:CYS753 3.3 88.1 1.0 CB B:CYS750 3.3 79.6 1.0 CB B:CYS734 3.4 69.6 1.0 N B:CYS734 4.0 69.0 1.0 N B:CYS753 4.1 83.0 1.0 CA B:CYS734 4.3 71.6 1.0 CA B:CYS753 4.3 85.5 1.0 CA B:CYS731 4.7 64.1 1.0 CA B:CYS750 4.7 79.1 1.0 CG2 B:VAL755 4.8 72.4 1.0 CB B:LYS752 4.9 81.2 1.0

Zinc binding site 3 out of 3 in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 2 (Composite Map)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 2 (Composite Map) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1303 b:81.6 occ:1.00 SG B:CYS1126 2.3 79.7 1.0 SG B:CYS1139 2.3 70.4 1.0 SG B:CYS1142 2.3 74.4 1.0 SG B:CYS1123 2.3 83.5 1.0 CB B:CYS1142 2.8 66.4 1.0 CB B:CYS1123 3.0 59.9 1.0 CB B:CYS1139 3.2 60.0 1.0 CB B:CYS1126 3.4 52.2 1.0 N B:CYS1126 3.9 60.5 1.0 N B:CYS1142 3.9 69.4 1.0 CA B:CYS1142 3.9 69.8 1.0 CA B:CYS1126 4.2 55.3 1.0 CA B:CYS1123 4.5 50.3 1.0 OG1 B:THR1128 4.7 56.5 1.0 CA B:CYS1139 4.7 55.4 1.0 C B:CYS1126 4.8 65.8 1.0 C B:CYS1142 4.9 76.8 1.0 N B:GLY1144 4.9 51.4 1.0 CB B:LYS1125 5.0 65.6 1.0 N B:GLY1143 5.0 76.3 1.0 C B:CYS1123 5.0 47.2 1.0

M.Martinez-Carranza, L.Sauguet. Communication Between Dna Polymerases and Replication Protein A Within the Archaeal Replisome To Be Published.