Zinc in PDB, part 556 (files: 22201-22240),
PDB 9dgg-9e86
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 22201-22240 (PDB 9dgg-9e86).
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9dgg (Zn: 4) - NCPRC1RYBP Bound to Unmodified Nucleosome
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9di4 (Zn: 2) - RMI1-RMI2 Bound to Cyclic Peptide L4
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9dif (Zn: 2) - Cbass Pseudomonas Syringae CAP5 Tetramer with Dna Duplex and 3'2'-C- Gamp Cyclic Dinucleotide Ligand
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9dih (Zn: 2) - Cbass Pseudomonas Syringae CAP5 Tetramer with Dna Duplex and 3'2'-C- Diamp Cyclic Dinucleotide Ligand
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9dj8 (Zn: 2) - Rna-NSP9 Bound to the Niran Domain of the E-Rtc with An Empty G-Pocket
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9dno (Zn: 6) - Structure of UBR1-Rff Complex
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9dnp (Zn: 6) - Structure of UBR2-Rff Complex
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9dnq (Zn: 6) - Structure of UBR2-Ryf Complex
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9dnr (Zn: 3) - Structure of UBR2-Rwf Complex
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9dou (Zn: 4) - Taeniopygia Guttata R2 Retrotransposon (R2TG) Initiating Target-Primed Reverse Transcription
Other atoms:
Mg (1);
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9dp5 (Zn: 2) - Crystal Structure of Hydra Adenosine Deaminase Acting on Rna (Adar) Deaminase Domain
Other atoms:
Cl (1);
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9dqb (Zn: 1) - Cryo-Em Structure of A Double-Loaded Sumo E1-E2-SUMO1 Complex.
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9dr5 (Zn: 8) - Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound, P1 Form)
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9dr6 (Zn: 2) - Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound)
Other atoms:
Cl (2);
Ca (7);
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9drj (Zn: 1) - Cryo-Em Structure of A Sumo E1-E2-SUMO1 Complex.
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9dsy (Zn: 5) - Crystal Structure of C4-Dicarboxylate-Binding Periplasmic Protein (PA5167) of Tripartite Atp-Independent Periplasmic Transporter Family From Pseudomonas Aeruginosa PAO1 in Complex with Succinic Acid
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9dtr (Zn: 7) - Structure of the Yeast Post-Catalytic P Complex Spliceosome at 2.3 Angstrom Resolution
Other atoms:
Mg (2);
K (4);
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9dtt (Zn: 2) - Cryo-Em Structure of DENV2 NS5 in Complex with Stem Loop A (Sla)
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9dvs (Zn: 2) - Cryoem Structure of SYN7942 Rnap-Siga Holoenzyme
Other atoms:
Mg (1);
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9dvu (Zn: 2) - Cryoem Structure of Rpaa Bound to Pkaibc Dna and SYN7942 Rnap-Siga Holoenzyme
Other atoms:
Mg (1);
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9dy3 (Zn: 7) - Crystal Structure of C4-Dicarboxylate-Binding Periplasmic Protein (PA5167) of Tripartite Atp-Independent Periplasmic Transporter Family From Pseudomonas Aeruginosa PAO1 in Complex with L-Malate
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9dzn (Zn: 1) - KAT6A Myst Domain Complexed with A H3K14-Coa Bisubstrate Inhibitor
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9e0i (Zn: 1) - Structure of the HKU5-19S Rbd Bound to the Bos Taurus ACE2 Receptor
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9e2y (Zn: 5) - Cryo-Em Structure of Yeast Cmg Helicase Stalled at G4-Containing Dna Template, State 3
Other atoms:
Mg (6);
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9e3m (Zn: 6) - Cryo-Em Structure of the Human P2X7 Receptor in the Apo Closed State
Other atoms:
Na (1);
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9e3q (Zn: 6) - Cryo-Em Structure of the Mouse P2X7 Receptor in the Apo Closed State
Other atoms:
Na (1);
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9e4n (Zn: 1) - E. Coli Acetyl-Coa Carboxylase, Narrow Helical Tube, 4.04 Angstrom
Other atoms:
Mg (1);
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9e4o (Zn: 1) - E. Coli Acetyl-Coa Carboxylase, Wide Stacked Tube, 3.98 Angstrom
Other atoms:
Mg (1);
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9e5z (Zn: 1) - Cryo-Em Structure of COP9 Signalosome
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9e6e (Zn: 6) - Yeast FZF1 Zn-Fingers 1-3 Bound to YHB1 26 Bp Dna
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9e6r (Zn: 8) - BCL11A ZF4-6 in Complex with A Dna Sequence Observed in the Human Globin Locus Containing Motif Tgacca
Other atoms:
Mg (2);
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9e6s (Zn: 6) - BCL11A ZF4-6 with K784T Mutation in Complex with A Dna Sequence Observed in the Human Globin Locus Containing Motif Tgacca
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9e6t (Zn: 6) - BCL11A ZF4-6 in Complex with A Dna Sequence Observed in the Human Globin Locus Containing Motif Tgccca
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9e77 (Zn: 1) - Cryo-Em Structure of Csn-N8 in Complex with CSN5I-3
Other atoms:
F (2);
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9e7v (Zn: 2) - Off-Pathway Mycobacterium Tuberculosis Transcription Initiation Promoter Complex (Rna Polymerase with Sigma-A, Card, and Rbpa)
Other atoms:
Mg (1);
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9e7y (Zn: 2) - De Novo Mycobacterium Tuberculosis Transcription Initiation Promoter Complex with 7-Mer Rna and Disordered Beta' Lid Element (Rna Polymerase with Sigma-A, Card, and Rbpa)
Other atoms:
Mg (1);
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9e81 (Zn: 1) - Cryo-Em Structure of COP9 Signalosome in Complex with CSN5I-3
Other atoms:
F (2);
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9e84 (Zn: 2) - De Novo Mycobacterium Tuberculosis Transcription Initiation Promoter Complex with 6-Mer Rna and Disordered Sigma-A Region 4 Domain (Rna Polymerase with Sigma-A, Card, and Rbpa)
Other atoms:
Mg (1);
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9e85 (Zn: 2) - De Novo Mycobacterium Tuberculosis Transcription Initiation Promoter Complex with 6-Mer Rna and Closed Beta' Clamp (Rna Polymerase with Sigma-A, Card, and Rbpa)
Other atoms:
Mg (1);
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9e86 (Zn: 2) - De Novo Mycobacterium Tuberculosis Transcription Initiation Promoter Complex with 5-Mer Rna and Open Beta' Clamp (Rna Polymerase with Sigma-A, Card, and Rbpa)
Other atoms:
Mg (1);
Page generated: Mon Dec 15 11:45:35 2025
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