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Zinc in PDB, part 430 (files: 17161-17200), PDB 7b4d-7bkb

Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms. PDB files: 17161-17200 (PDB 7b4d-7bkb).
  1. 7b4d (Zn: 1) - Structural Basis of Reactivation of Oncogenic P53 Mutants By A Small Molecule: Methylene Quinuclidinone (Mq). Human P53DBD-R273C/S240R Double Mutant Bound to Dna and Mq: R273C/S240R-Dna-Mq
  2. 7b4e (Zn: 1) - Structural Basis of Reactivation of Oncogenic P53 Mutants By A Small Molecule: Methylene Quinuclidinone (Mq). Human P53DBD-R282W Mutant Bound to Dna and Mq: R282W-Dna-Mq
  3. 7b4f (Zn: 1) - Structural Basis of Reactivation of Oncogenic P53 Mutants By A Small Molecule: Methylene Quinuclidinone (Mq). Human P53DBD-R282W Mutant Bound to Dna: R282W-Mq (I)
  4. 7b4g (Zn: 1) - Structural Basis of Reactivation of Oncogenic P53 Mutants By A Small Molecule: Methylene Quinuclidinone (Mq). Human P53DBD-R282W Mutant Bound to Dna: R282W-Mq (II)
  5. 7b4h (Zn: 1) - Structural Basis of Reactivation of Oncogenic P53 Mutants By A Small Molecule: Methylene Quinuclidinone (Mq). Human Wild-Type P53DBD Bound to Dna and Mq: Wt-Dna-Mq (III)
  6. 7b4n (Zn: 1) - Structural Basis of Reactivation of Oncogenic P53 Mutants By A Small Molecule: Methylene Quinuclidinone (Mq). Human Wild-Type P53DBD Bound to Dna and Mq: Wt-Dna-Mq (II)
  7. 7b5l (Zn: 9) - Ubiquitin Ligation to F-Box Protein Substrates By Scf-Rbr E3-E3 Super- Assembly: NEDD8-CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-P27- UBE2L3~Ub~ARIH1. Transition State 1
  8. 7b5m (Zn: 5) - Ubiquitin Ligation to F-Box Protein Substrates By Scf-Rbr E3-E3 Super- Assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-P27~Ub~ARIH1. Transition State 2
  9. 7b5n (Zn: 9) - Ubiquitin Ligation to F-Box Protein Substrates By Scf-Rbr E3-E3 Super- Assembly: NEDD8-CUL1-RBX1-UBE2L3~Ub~ARIH1.
  10. 7b5s (Zn: 5) - Ubiquitin Ligation to F-Box Protein Substrates By Scf-Rbr E3-E3 Super- Assembly: CUL1-RBX1-ARIH1 Ariadne. Transition State 1
  11. 7b7u (Zn: 6) - Cryo-Em Structure of Mammalian Rna Polymerase II in Complex with Human RPAP2
  12. 7b83 (Zn: 1) - Structure of Sars-Cov-2 Main Protease Bound to Pyrithione Zinc
    Other atoms: Cl (1);
  13. 7b8e (Zn: 1) - Torpedo Californica Acetylcholinesterase Complexed with Ca+2
    Other atoms: Ca (1);
  14. 7b91 (Zn: 3) - Structure of A Minimal SF3B Core in Complex with Pladienolide D (Form I)
  15. 7b92 (Zn: 3) - Structure of A Minimal SF3B Core in Complex with Sudemycin D6 (Form II)
  16. 7b93 (Zn: 1) - Cryo-Em Structure of Mitochondrial Complex I From Mus Musculus Inhibited By Iacs-2858 at 3.0 A
    Other atoms: F (3); Fe (28);
  17. 7b9c (Zn: 3) - Structure of A Minimal SF3B Core in Complex with Spliceostatin A (Form I)
  18. 7b9h (Zn: 2) - Crystal Structure of the PDE4D Catalytic Domain in Complex with Gebr- 42A
    Other atoms: Mg (8);
  19. 7bad (Zn: 1) - Crystal Structure of Pafb in Complex with P-Sulfonato-Calix[8]Arene and Zinc
  20. 7baf (Zn: 3) - Crystal Structure of Pafb in Complex with Zinc
  21. 7bah (Zn: 2) - Structure of Rig-I Ctd Bound to Oh-Rna
  22. 7bai (Zn: 5) - Structure of Rig-I Ctd (I875A) Bound to P-Rna
  23. 7bb8 (Zn: 2) - Crystal Structure of Lugdulysin, A Staphylococcus Lugdunensis M30 Zinc Metallopeptidase
    Other atoms: As (1); Ca (6);
  24. 7bb9 (Zn: 1) - Crystal Structure of Lugdulysin E242Q Y315F Mutant
    Other atoms: Ca (3);
  25. 7bbd (Zn: 2) - Crystal Structure of Monoubiquitinated TRIM21 Ring (Ub-Ring) in Complex with Ubiquitin Charged UBE2N (UBE2N~Ub) and UBE2V2
  26. 7bbj (Zn: 4) - CD73 in Complex with the Humanized Antagonistic Antibody MAB19
    Other atoms: Mg (2);
  27. 7bbu (Zn: 1) - Crystal Structure of Human Prolyl-Trna Synthetase in Complex with NCP26 and L-Proline
    Other atoms: Cl (1);
  28. 7bez (Zn: 2) - Zinc Bound Domain 3 of Carbonic Anhydrase From Marine Diatom Thalassiosira Weissflogii
  29. 7bf0 (Zn: 2) - Zn-Bound Domain 3 of CDCA1 in Complex with Carbon Dioxide
    Other atoms: Cl (1);
  30. 7bfz (Zn: 2) - X-Ray Structure of Human Prostate-Specific Membrane Antigen(Psma) in Complex with A Inhibitor Glu-490
    Other atoms: Na (2); Cl (1); Ca (1);
  31. 7bgm (Zn: 9) - Crystal Structure of MTHISN2, A Bifunctional Enzyme From the Histidine Biosynthetic Pathway
  32. 7bgn (Zn: 18) - Crystal Structure of MTHISN2-Amp Complex, A Bifunctional Enzyme From the Histidine Biosynthetic Pathway
    Other atoms: Mg (1);
  33. 7bh9 (Zn: 1) - Sars-Cov-2 Rbd-62 in Complex with ACE2 Peptidase Domain
  34. 7bhh (Zn: 1) - 4-(2-(3-(4-Iodophenyl)Selenoureido)Ethyl)Benzenesulfonamide in Complex with Carbonic Anhydrase II
    Other atoms: I (1);
  35. 7bi5 (Zn: 1) - Human Ca II in Complex with Benzyl Alcohol
  36. 7bj1 (Zn: 3) - Crystal Structure of SMYD3 with Diperodon S Enantiomer Bound to Allosteric Site
  37. 7bj8 (Zn: 2) - Structure of L1 with 2-Mercaptomethyl-Thiazolidine D-Syn-1B
  38. 7bj9 (Zn: 2) - Structure of Sfh-I with 2-Mercaptomethyl-Thiazolidine L-Anti-1A
  39. 7bjk (Zn: 5) - Crystal Structure of the Chloroplastic Fe Superoxide Dismutase PAP9 From Arabidopsis Thaliana.
  40. 7bkb (Zn: 4) - Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)
    Other atoms: Fe (212); Mo (2);
Page generated: Mon Dec 15 11:40:46 2025

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