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Zinc in PDB 7bbu: Crystal Structure of Human Prolyl-Trna Synthetase in Complex with NCP26 and L-Proline

Enzymatic activity of Crystal Structure of Human Prolyl-Trna Synthetase in Complex with NCP26 and L-Proline

All present enzymatic activity of Crystal Structure of Human Prolyl-Trna Synthetase in Complex with NCP26 and L-Proline:
6.1.1.15; 6.1.1.17;

Protein crystallography data

The structure of Crystal Structure of Human Prolyl-Trna Synthetase in Complex with NCP26 and L-Proline, PDB code: 7bbu was solved by C.Johansson, M.Tye, N.C.Payne, R.Mazitschek, T.Krojer, U.C.T.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.95 / 2.19
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.09, 87.09, 108.6, 90, 90, 120
R / Rfree (%) 20.6 / 23.3

Other elements in 7bbu:

The structure of Crystal Structure of Human Prolyl-Trna Synthetase in Complex with NCP26 and L-Proline also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Prolyl-Trna Synthetase in Complex with NCP26 and L-Proline (pdb code 7bbu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human Prolyl-Trna Synthetase in Complex with NCP26 and L-Proline, PDB code: 7bbu:

Zinc binding site 1 out of 1 in 7bbu

Go back to Zinc Binding Sites List in 7bbu
Zinc binding site 1 out of 1 in the Crystal Structure of Human Prolyl-Trna Synthetase in Complex with NCP26 and L-Proline


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Prolyl-Trna Synthetase in Complex with NCP26 and L-Proline within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1809

b:58.3
occ:1.00
 SG A:CYS1497 2.4 63.8 1.0
SG A:CYS1448 2.4 46.7 1.0
SG A:CYS1495 2.5 52.2 1.0
SG A:CYS1453 2.5 46.4 1.0
CB A:CYS1495 3.2 53.3 1.0
CB A:CYS1453 3.2 48.1 1.0
CB A:CYS1448 3.3 47.4 1.0
CB A:CYS1497 3.4 62.6 1.0
N A:CYS1448 3.9 44.9 1.0
N A:CYS1497 4.1 58.8 1.0
ND2 A:ASN1500 4.2 73.8 1.0
CA A:CYS1448 4.2 46.7 1.0
CA A:CYS1497 4.4 62.3 1.0
CD1 A:PHE1447 4.4 40.5 1.0
CE1 A:PHE1447 4.4 42.2 1.0
CB A:ASN1500 4.5 74.5 1.0
O A:HOH2010 4.5 62.8 1.0
CA A:CYS1495 4.6 53.1 1.0
CA A:CYS1453 4.7 48.8 1.0
CG A:ASN1500 4.8 76.8 1.0
N A:VAL1496 4.9 51.2 1.0
C A:CYS1495 4.9 54.6 1.0
O A:ASN1500 4.9 72.0 1.0

Reference:

C.Johansson, M.Tye, N.C.Payne, R.Mazitschek, T.Krojer, U.C.T.Oppermann. Crystal Structure of Human Prolyl-Trna Synthetase in Complex with NCP26 and L-Proline To Be Published.
Page generated: Tue Oct 29 17:35:09 2024

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