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Zinc in PDB 9bz0: Structure of An STK19-Containing Tc-Ner Complex

Enzymatic activity of Structure of An STK19-Containing Tc-Ner Complex

All present enzymatic activity of Structure of An STK19-Containing Tc-Ner Complex:
2.7.7.6;

Other elements in 9bz0:

The structure of Structure of An STK19-Containing Tc-Ner Complex also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of An STK19-Containing Tc-Ner Complex (pdb code 9bz0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the Structure of An STK19-Containing Tc-Ner Complex, PDB code: 9bz0:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 10 in 9bz0

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Zinc binding site 1 out of 10 in the Structure of An STK19-Containing Tc-Ner Complex


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of An STK19-Containing Tc-Ner Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2001

b:47.1
occ:1.00
 NE2 A:HIS84 2.1 32.1 1.0
SG A:CYS74 2.3 22.1 1.0
SG A:CYS81 2.3 45.0 1.0
SG A:CYS71 2.3 40.6 1.0
CB A:CYS71 2.9 41.2 1.0
CD2 A:HIS84 2.9 32.6 1.0
CE1 A:HIS84 3.2 28.5 1.0
CB A:CYS74 3.5 31.5 1.0
CB A:CYS81 3.6 38.7 1.0
N A:CYS74 3.9 32.1 1.0
CG A:HIS84 4.1 24.2 1.0
ND1 A:HIS84 4.2 24.9 1.0
CA A:CYS74 4.2 28.8 1.0
CA A:CYS81 4.3 36.4 1.0
CA A:CYS71 4.4 38.0 1.0
CB A:THR73 4.5 29.8 1.0
CD A:PRO82 4.5 34.8 1.0
N A:GLY83 4.6 33.7 1.0
CA A:GLY63 4.7 38.8 1.0
C A:CYS74 4.8 32.5 1.0
C A:THR73 4.8 27.5 1.0
C A:CYS81 4.8 43.4 1.0
N A:PRO82 4.8 34.2 1.0
N A:THR73 4.9 35.8 1.0
C A:CYS71 5.0 38.8 1.0
CA A:GLY83 5.0 32.8 1.0
N A:GLY76 5.0 41.5 1.0

Zinc binding site 2 out of 10 in 9bz0

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Zinc binding site 2 out of 10 in the Structure of An STK19-Containing Tc-Ner Complex


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of An STK19-Containing Tc-Ner Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2002

b:50.3
occ:1.00
 SG A:CYS111 2.3 42.9 1.0
SG A:CYS154 2.3 32.8 1.0
SG A:CYS114 2.3 23.6 1.0
SG A:CYS184 2.3 41.4 1.0
CB A:CYS111 3.1 31.4 1.0
CB A:CYS114 3.2 21.4 1.0
CB A:CYS154 3.2 26.7 1.0
CB A:CYS184 3.7 23.7 1.0
N A:CYS184 3.8 12.4 1.0
N A:CYS114 3.8 6.9 1.0
CA A:CYS114 4.0 10.2 1.0
CA A:CYS184 4.2 8.8 1.0
O A:CYS184 4.5 29.1 1.0
CA A:CYS111 4.5 21.2 1.0
C A:CYS184 4.6 12.8 1.0
CA A:CYS154 4.7 26.2 1.0
CB A:PHE113 4.8 13.1 1.0
C A:GLY183 4.8 8.4 1.0
C A:CYS114 4.8 25.2 1.0
C A:PHE113 4.8 5.0 1.0
CA A:GLY183 4.9 18.2 1.0

Zinc binding site 3 out of 10 in 9bz0

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Zinc binding site 3 out of 10 in the Structure of An STK19-Containing Tc-Ner Complex


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of An STK19-Containing Tc-Ner Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1201

b:74.1
occ:1.00
 SG B:CYS1137 2.3 56.8 1.0
SG B:CYS1119 2.3 52.1 1.0
SG B:CYS1122 2.3 48.4 1.0
CB B:CYS1140 2.9 56.1 1.0
CB B:CYS1119 3.1 44.3 1.0
CB B:CYS1122 3.2 37.9 1.0
CB B:CYS1137 3.4 53.6 1.0
SG B:CYS1140 3.7 62.1 1.0
N B:CYS1122 3.7 37.1 1.0
CA B:CYS1122 4.0 37.1 1.0
CA B:CYS1140 4.2 52.1 1.0
N B:CYS1140 4.3 53.4 1.0
C B:LEU1121 4.5 37.2 1.0
CB B:LEU1121 4.5 41.2 1.0
CA B:CYS1119 4.6 40.1 1.0
C B:CYS1122 4.7 41.2 1.0
CA B:CYS1137 4.8 53.9 1.0
CA B:LEU1121 4.9 36.1 1.0
N B:LEU1121 4.9 40.4 1.0
N B:GLY1123 4.9 36.3 1.0

Zinc binding site 4 out of 10 in 9bz0

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Zinc binding site 4 out of 10 in the Structure of An STK19-Containing Tc-Ner Complex


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of An STK19-Containing Tc-Ner Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn301

b:78.7
occ:1.00
 SG C:CYS90 2.3 55.6 1.0
SG C:CYS94 2.3 39.1 1.0
SG C:CYS88 2.3 49.3 1.0
SG C:CYS97 2.3 45.6 1.0
CB C:CYS88 3.2 48.8 1.0
CB C:CYS97 3.3 38.3 1.0
CB C:CYS90 3.4 53.3 1.0
CB C:CYS94 3.6 39.6 1.0
N C:CYS94 3.7 38.1 1.0
N C:CYS97 4.0 40.7 1.0
CA C:CYS94 4.2 36.9 1.0
N C:CYS90 4.2 54.8 1.0
CA C:CYS97 4.3 36.0 1.0
C C:PHE93 4.3 41.5 1.0
O C:CYS94 4.3 41.3 1.0
CA C:CYS90 4.4 53.4 1.0
C C:CYS94 4.6 37.5 1.0
CA C:CYS88 4.6 48.1 1.0
C C:GLU96 4.6 39.7 1.0
CA C:PHE93 4.7 41.5 1.0
CB C:GLU96 4.8 41.9 1.0
C C:CYS88 4.8 49.5 1.0
O C:GLU92 4.9 55.6 1.0
N C:THR89 4.9 54.0 1.0
O C:PHE93 5.0 45.6 1.0

Zinc binding site 5 out of 10 in 9bz0

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Zinc binding site 5 out of 10 in the Structure of An STK19-Containing Tc-Ner Complex


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of An STK19-Containing Tc-Ner Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn201

b:60.0
occ:1.00
 SG I:CYS17 2.3 27.3 1.0
SG I:CYS20 2.3 36.7 1.0
SG I:CYS42 2.3 36.3 1.0
SG I:CYS39 2.3 35.5 1.0
CB I:CYS17 3.0 18.8 1.0
CB I:CYS39 3.2 28.8 1.0
CB I:CYS20 3.5 21.5 1.0
CB I:CYS42 3.7 32.0 1.0
N I:CYS42 4.1 33.4 1.0
N I:CYS20 4.1 25.4 1.0
CA I:CYS20 4.3 22.7 1.0
CA I:CYS42 4.3 29.7 1.0
CA I:CYS17 4.5 16.0 1.0
CB I:TYR44 4.6 23.0 1.0
O I:CYS42 4.6 39.7 1.0
CA I:CYS39 4.7 15.4 1.0
C I:CYS42 4.7 32.6 1.0
CB I:ASN41 4.7 30.3 1.0
C I:ASN41 4.8 28.6 1.0
C I:CYS20 4.8 29.5 1.0
CB I:GLU19 4.9 35.3 1.0
C I:GLU19 4.9 25.7 1.0
N I:ASN22 5.0 21.2 1.0

Zinc binding site 6 out of 10 in 9bz0

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Zinc binding site 6 out of 10 in the Structure of An STK19-Containing Tc-Ner Complex


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structure of An STK19-Containing Tc-Ner Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn202

b:78.3
occ:1.00
 SG I:CYS89 2.3 57.2 1.0
SG I:CYS119 2.3 48.3 1.0
SG I:CYS86 2.3 53.0 1.0
SG I:CYS114 2.3 48.9 1.0
CB I:CYS86 3.0 50.8 1.0
CB I:CYS114 3.0 40.2 1.0
CB I:CYS119 3.4 46.7 1.0
CB I:CYS89 3.5 51.6 1.0
N I:CYS89 4.2 48.3 1.0
CB I:HIS91 4.2 47.2 1.0
CA I:CYS89 4.3 50.0 1.0
O I:CYS119 4.4 53.6 1.0
CA I:CYS86 4.5 48.9 1.0
CA I:CYS114 4.5 34.3 1.0
CB I:HIS121 4.5 37.5 1.0
CB I:ALA116 4.6 46.2 1.0
N I:HIS91 4.7 50.2 1.0
CA I:CYS119 4.7 44.7 1.0
C I:CYS89 4.8 51.3 1.0
C I:CYS119 4.9 48.3 1.0

Zinc binding site 7 out of 10 in 9bz0

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Zinc binding site 7 out of 10 in the Structure of An STK19-Containing Tc-Ner Complex


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Structure of An STK19-Containing Tc-Ner Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn101

b:56.0
occ:1.00
 SG J:CYS45 2.3 30.3 1.0
SG J:CYS7 2.3 31.3 1.0
SG J:CYS10 2.3 23.4 1.0
SG J:CYS44 2.3 33.1 1.0
CB J:CYS7 3.3 21.9 1.0
N J:CYS45 3.4 26.0 1.0
CB J:CYS10 3.4 20.4 1.0
CB J:CYS45 3.6 23.6 1.0
C J:CYS44 3.7 20.6 1.0
CB J:CYS44 3.7 24.9 1.0
CA J:CYS45 3.7 20.8 1.0
N J:CYS10 4.0 23.7 1.0
O J:CYS44 4.0 28.3 1.0
CA J:CYS10 4.3 20.7 1.0
NE J:ARG42 4.3 26.9 1.0
CA J:CYS44 4.3 24.3 1.0
CB J:THR9 4.7 20.3 1.0
CB J:LYS12 4.7 19.5 1.0
NH1 J:ARG42 4.7 27.8 1.0
CA J:CYS7 4.8 18.1 1.0
CB J:ARG42 4.8 23.4 1.0
C J:CYS10 4.9 20.0 1.0
C J:THR9 4.9 19.3 1.0
N J:CYS44 4.9 23.6 1.0

Zinc binding site 8 out of 10 in 9bz0

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Zinc binding site 8 out of 10 in the Structure of An STK19-Containing Tc-Ner Complex


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Structure of An STK19-Containing Tc-Ner Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn101

b:68.0
occ:1.00
 SG L:CYS36 2.3 39.2 1.0
SG L:CYS39 2.3 49.0 1.0
SG L:CYS22 2.3 27.3 1.0
SG L:CYS19 2.3 44.0 1.0
CB L:CYS19 3.1 24.8 1.0
CB L:CYS36 3.1 34.4 1.0
CB L:CYS22 3.3 27.0 1.0
CB L:CYS39 3.6 39.2 1.0
N L:CYS22 3.9 31.9 1.0
N L:CYS39 4.1 40.0 1.0
CA L:CYS22 4.1 27.7 1.0
CB L:TYR41 4.3 33.5 1.0
CA L:CYS39 4.3 35.6 1.0
CA L:CYS36 4.5 35.9 1.0
CA L:CYS19 4.5 21.2 1.0
C L:CYS22 4.7 26.9 1.0
N L:TYR41 4.8 42.6 1.0
C L:CYS39 4.8 34.4 1.0
CB L:GLU21 4.9 38.8 1.0
C L:GLU21 4.9 35.1 1.0
N L:GLY40 4.9 32.8 1.0
CB L:THR24 5.0 30.6 1.0

Zinc binding site 9 out of 10 in 9bz0

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Zinc binding site 9 out of 10 in the Structure of An STK19-Containing Tc-Ner Complex


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Structure of An STK19-Containing Tc-Ner Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn1001

b:78.8
occ:1.00
 SG M:CYS53 2.3 52.0 1.0
SG M:CYS26 2.3 55.9 1.0
SG M:CYS50 2.3 42.8 1.0
SG M:CYS29 2.3 47.7 1.0
CB M:CYS26 2.9 38.9 1.0
CB M:CYS29 3.2 33.1 1.0
CB M:CYS50 3.2 39.0 1.0
CB M:CYS53 3.5 41.2 1.0
N M:CYS29 3.8 35.6 1.0
N M:CYS53 3.9 30.8 1.0
CA M:CYS29 4.1 33.0 1.0
CA M:CYS53 4.3 32.6 1.0
CA M:CYS26 4.4 34.0 1.0
OG M:SER34 4.6 55.3 1.0
CB M:VAL52 4.6 37.6 1.0
CA M:CYS50 4.7 37.2 1.0
CB M:PHE28 4.8 39.8 1.0
C M:CYS29 4.8 36.0 1.0
C M:PHE28 4.8 41.1 1.0
C M:VAL52 4.9 34.5 1.0
C M:CYS53 5.0 38.6 1.0

Zinc binding site 10 out of 10 in 9bz0

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Zinc binding site 10 out of 10 in the Structure of An STK19-Containing Tc-Ner Complex


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Structure of An STK19-Containing Tc-Ner Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
c:Zn1001

b:194.9
occ:1.00
 ND1 c:HIS588 2.3 136.1 1.0
SG c:CYS567 2.3 132.6 1.0
SG c:CYS585 2.3 143.7 1.0
SG c:CYS577 2.6 132.1 1.0
CE1 c:HIS588 2.7 135.4 1.0
CB c:CYS567 3.1 129.1 1.0
CB c:CYS585 3.5 139.4 1.0
CG c:HIS588 3.6 135.4 1.0
CB c:CYS577 3.6 128.9 1.0
NE2 c:HIS588 4.0 133.5 1.0
CB c:ARG579 4.3 122.0 1.0
CB c:HIS588 4.3 135.6 1.0
CD2 c:HIS588 4.4 133.9 1.0
CA c:CYS567 4.5 128.5 1.0
CD2 c:PHE587 4.5 131.4 1.0
C c:CYS567 4.7 128.9 1.0
O c:CYS567 4.7 129.8 1.0
OD2 c:ASP581 4.7 127.5 1.0
CG c:ARG579 4.7 122.2 1.0
CA c:CYS585 4.9 139.9 1.0

Reference:

T.E.T.Mevissen, M.Kuemmecke, E.W.Schmid, L.Farnung, J.C.Walter. STK19 Couples Rna Polymerase II to Tfiih During Cell-Free Transcription-Coupled Dna Repair To Be Published.
Page generated: Sun Feb 9 01:02:08 2025

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