Zinc in PDB 8zdr: Cryo-Em Structure of the CAS9D-Sgrna-Target Dna Complex

The binding sites of Zinc atom in the Cryo-Em Structure of the CAS9D-Sgrna-Target Dna Complex (pdb code 8zdr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of the CAS9D-Sgrna-Target Dna Complex, PDB code: 8zdr:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of the CAS9D-Sgrna-Target Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the CAS9D-Sgrna-Target Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn801 b:55.8 occ:1.00 ND1 C:HIS267 2.1 40.1 1.0 SG C:CYS187 2.3 51.7 1.0 SG C:CYS182 2.3 40.1 1.0 SG C:CYS264 2.3 39.2 1.0 CE1 C:HIS267 2.8 35.6 1.0 CB C:CYS187 2.9 37.7 1.0 CB C:CYS182 3.2 31.7 1.0 CG C:HIS267 3.3 38.8 1.0 CB C:CYS264 3.4 28.2 1.0 CB C:HIS267 3.8 35.2 1.0 NE2 C:HIS267 4.0 36.2 1.0 N C:CYS264 4.1 26.8 1.0 CD2 C:HIS267 4.2 36.3 1.0 CG2 C:VAL184 4.3 42.4 1.0 CG2 C:VAL189 4.3 29.4 1.0 CA C:CYS187 4.4 40.4 1.0 CA C:CYS264 4.4 25.6 1.0 O C:CYS187 4.6 43.9 1.0 CA C:CYS182 4.7 29.2 1.0 N C:HIS267 4.8 34.7 1.0 C C:CYS187 4.9 42.5 1.0 CA C:HIS267 5.0 32.5 1.0

X.Li, H.Zhang, Z.Liu. Cryo-Em Structure of the CAS9D-Sgrna-Target Dna Complex To Be Published.