Zinc in PDB 8dgd: Crystal Structure of Gaf Domain-Containing Protein, From Klebsiella Pneumoniae

The structure of Crystal Structure of Gaf Domain-Containing Protein, From Klebsiella Pneumoniae, PDB code: 8dgd was solved by Seattle Structural Genomics Center For Infectious Disease, S.L.Delker, M.J.Weiss, D.D.Lorimer, T.E.Edwards, Seattle Structural Genomics Centerfor Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.64 / 1.90
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	70.68, 114.38, 73.89, 90, 90, 90
R / Rfree (%)	17.2 / 22

The binding sites of Zinc atom in the Crystal Structure of Gaf Domain-Containing Protein, From Klebsiella Pneumoniae (pdb code 8dgd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Gaf Domain-Containing Protein, From Klebsiella Pneumoniae, PDB code: 8dgd:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Gaf Domain-Containing Protein, From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Gaf Domain-Containing Protein, From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:22.5 occ:0.48 OD2 A:ASP13 2.1 20.5 1.0 NE2 A:HIS-2 2.2 27.0 1.0 OD1 A:ASP13 2.6 20.6 1.0 CG A:ASP13 2.6 24.1 1.0 CE1 A:HIS-2 3.0 29.5 1.0 CD2 A:HIS-2 3.2 33.7 1.0 NH2 A:ARG38 4.0 23.1 0.5 NH1 A:ARG38 4.1 22.7 0.5 CB A:ASP13 4.1 19.8 1.0 NH1 A:ARG38 4.2 21.6 0.5 ND1 A:HIS-2 4.2 31.4 1.0 CG A:HIS-2 4.3 31.6 1.0 CZ A:ARG38 4.4 24.5 0.5 O A:ASP9 4.6 26.1 1.0 O A:HOH384 4.8 29.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Gaf Domain-Containing Protein, From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Gaf Domain-Containing Protein, From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn203 b:35.7 occ:0.53 NE2 A:HIS92 2.4 55.6 1.0 CD2 A:HIS92 2.9 54.0 1.0 CE1 A:HIS92 3.6 54.1 1.0 CG A:HIS92 4.1 42.8 1.0 CB A:ASP101 4.4 80.4 1.0 ND1 A:HIS92 4.4 45.0 1.0

Seattle Structural Genomics Center For Infectious Disease, S.L.Delker, M.J.Weiss, D.D.Lorimer, T.E.Edwards. Crystal Structure of Gaf Domain-Containing Protein, From Klebsiella Pneumoniae To Be Published.