Zinc in PDB 7fb9: Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
Enzymatic activity of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
All present enzymatic activity of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1):
1.15.1.1;
Protein crystallography data
The structure of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1), PDB code: 7fb9
was solved by
Y.Baek,
N.-C.Ha,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.52 /
2.70
|
|
Space group
|
P 32
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
112.43,
112.43,
209.28,
90,
90,
120
|
|
R / Rfree (%)
|
23 /
24.7
|
Other elements in 7fb9:
The structure of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1) also contains other interesting chemical elements:
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Zinc atom in the Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
(pdb code 7fb9). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 14 binding sites of Zinc where determined in the
Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1), PDB code: 7fb9:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 14 in 7fb9
Go back to
Zinc Binding Sites List in 7fb9
Zinc binding site 1 out
of 14 in the Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:39.7
occ:1.00
|
OD1
|
A:ASP83
|
2.0
|
38.9
|
1.0
|
|
ND1
|
A:HIS71
|
2.1
|
39.3
|
1.0
|
|
ND1
|
A:HIS80
|
2.2
|
35.1
|
1.0
|
|
ND1
|
A:HIS63
|
2.2
|
40.1
|
1.0
|
|
OD2
|
A:ASP83
|
2.4
|
35.4
|
1.0
|
|
CG
|
A:ASP83
|
2.5
|
38.0
|
1.0
|
|
CE1
|
A:HIS80
|
2.9
|
39.4
|
1.0
|
|
CE1
|
A:HIS71
|
3.0
|
38.7
|
1.0
|
|
CE1
|
A:HIS63
|
3.1
|
39.6
|
1.0
|
|
CG
|
A:HIS71
|
3.2
|
37.8
|
1.0
|
|
CG
|
A:HIS80
|
3.2
|
35.4
|
1.0
|
|
CG
|
A:HIS63
|
3.3
|
39.5
|
1.0
|
|
CB
|
A:HIS71
|
3.6
|
40.1
|
1.0
|
|
CB
|
A:HIS63
|
3.6
|
40.0
|
1.0
|
|
O
|
A:LYS136
|
3.7
|
38.7
|
1.0
|
|
CB
|
A:HIS80
|
3.7
|
36.0
|
1.0
|
|
CA
|
A:HIS71
|
4.0
|
41.1
|
1.0
|
|
NE2
|
A:HIS80
|
4.0
|
38.1
|
1.0
|
|
CB
|
A:ASP83
|
4.0
|
35.0
|
1.0
|
|
NE2
|
A:HIS71
|
4.2
|
36.9
|
1.0
|
|
CD2
|
A:HIS80
|
4.2
|
40.5
|
1.0
|
|
CD2
|
A:HIS71
|
4.3
|
36.0
|
1.0
|
|
NE2
|
A:HIS63
|
4.3
|
43.1
|
1.0
|
|
CD2
|
A:HIS63
|
4.4
|
42.5
|
1.0
|
|
N
|
A:HIS80
|
4.6
|
41.1
|
1.0
|
|
CA
|
A:ASP83
|
4.7
|
34.5
|
1.0
|
|
N
|
A:GLY72
|
4.8
|
38.9
|
1.0
|
|
C
|
A:LYS136
|
4.8
|
39.6
|
1.0
|
|
CA
|
A:HIS80
|
4.8
|
36.6
|
1.0
|
|
C
|
A:HIS71
|
4.9
|
44.9
|
1.0
|
|
N
|
A:HIS71
|
5.0
|
40.7
|
1.0
|
|
N
|
A:ASP83
|
5.0
|
36.2
|
1.0
|
|
Zinc binding site 2 out
of 14 in 7fb9
Go back to
Zinc Binding Sites List in 7fb9
Zinc binding site 2 out
of 14 in the Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn201
b:33.1
occ:1.00
|
OD1
|
B:ASP83
|
2.1
|
36.2
|
1.0
|
|
ND1
|
B:HIS71
|
2.1
|
39.1
|
1.0
|
|
ND1
|
B:HIS63
|
2.2
|
37.0
|
1.0
|
|
ND1
|
B:HIS80
|
2.4
|
36.2
|
1.0
|
|
CG
|
B:ASP83
|
2.8
|
36.9
|
1.0
|
|
OD2
|
B:ASP83
|
3.0
|
38.6
|
1.0
|
|
CE1
|
B:HIS71
|
3.0
|
40.3
|
1.0
|
|
CG
|
B:HIS63
|
3.1
|
34.4
|
1.0
|
|
CG
|
B:HIS71
|
3.2
|
35.7
|
1.0
|
|
CE1
|
B:HIS63
|
3.3
|
32.9
|
1.0
|
|
CE1
|
B:HIS80
|
3.3
|
33.7
|
1.0
|
|
CB
|
B:HIS63
|
3.3
|
33.6
|
1.0
|
|
CG
|
B:HIS80
|
3.3
|
35.2
|
1.0
|
|
CB
|
B:HIS71
|
3.5
|
35.8
|
1.0
|
|
CB
|
B:HIS80
|
3.7
|
35.0
|
1.0
|
|
O
|
B:LYS136
|
3.8
|
34.6
|
1.0
|
|
CA
|
B:HIS71
|
4.0
|
39.6
|
1.0
|
|
NE2
|
B:HIS71
|
4.2
|
37.5
|
1.0
|
|
CD2
|
B:HIS71
|
4.3
|
37.2
|
1.0
|
|
CB
|
B:ASP83
|
4.3
|
34.7
|
1.0
|
|
CD2
|
B:HIS63
|
4.3
|
35.1
|
1.0
|
|
NE2
|
B:HIS80
|
4.3
|
39.2
|
1.0
|
|
NE2
|
B:HIS63
|
4.3
|
33.0
|
1.0
|
|
CD2
|
B:HIS80
|
4.4
|
38.4
|
1.0
|
|
C
|
B:LYS136
|
4.7
|
29.8
|
1.0
|
|
CA
|
B:ASP83
|
4.8
|
36.4
|
1.0
|
|
CA
|
B:HIS63
|
4.8
|
31.8
|
1.0
|
|
N
|
B:HIS80
|
4.9
|
37.4
|
1.0
|
|
CA
|
B:HIS80
|
4.9
|
37.8
|
1.0
|
|
CD2
|
B:HIS46
|
5.0
|
42.0
|
1.0
|
|
N
|
B:HIS71
|
5.0
|
43.8
|
1.0
|
|
Zinc binding site 3 out
of 14 in 7fb9
Go back to
Zinc Binding Sites List in 7fb9
Zinc binding site 3 out
of 14 in the Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn201
b:30.0
occ:1.00
|
OD1
|
C:ASP83
|
2.0
|
31.8
|
1.0
|
|
ND1
|
C:HIS71
|
2.2
|
38.2
|
1.0
|
|
ND1
|
C:HIS63
|
2.2
|
36.4
|
1.0
|
|
ND1
|
C:HIS80
|
2.2
|
35.3
|
1.0
|
|
OD2
|
C:ASP83
|
2.4
|
35.0
|
1.0
|
|
CG
|
C:ASP83
|
2.5
|
34.0
|
1.0
|
|
CE1
|
C:HIS80
|
3.0
|
36.6
|
1.0
|
|
CE1
|
C:HIS71
|
3.1
|
36.0
|
1.0
|
|
CG
|
C:HIS80
|
3.2
|
34.5
|
1.0
|
|
CE1
|
C:HIS63
|
3.2
|
36.5
|
1.0
|
|
CG
|
C:HIS63
|
3.2
|
40.5
|
1.0
|
|
CG
|
C:HIS71
|
3.3
|
35.3
|
1.0
|
|
CB
|
C:HIS63
|
3.5
|
41.1
|
1.0
|
|
CB
|
C:HIS80
|
3.6
|
32.9
|
1.0
|
|
CB
|
C:HIS71
|
3.7
|
36.1
|
1.0
|
|
O
|
C:LYS136
|
3.7
|
35.8
|
1.0
|
|
CA
|
C:HIS71
|
4.0
|
37.7
|
1.0
|
|
CB
|
C:ASP83
|
4.0
|
33.6
|
1.0
|
|
NE2
|
C:HIS80
|
4.1
|
39.2
|
1.0
|
|
CD2
|
C:HIS80
|
4.1
|
38.7
|
1.0
|
|
NE2
|
C:HIS71
|
4.2
|
34.7
|
1.0
|
|
NE2
|
C:HIS63
|
4.3
|
41.4
|
1.0
|
|
CD2
|
C:HIS63
|
4.3
|
42.4
|
1.0
|
|
CD2
|
C:HIS71
|
4.3
|
34.5
|
1.0
|
|
CA
|
C:ASP83
|
4.7
|
34.0
|
1.0
|
|
N
|
C:GLY72
|
4.7
|
36.1
|
1.0
|
|
N
|
C:HIS80
|
4.8
|
41.5
|
1.0
|
|
CA
|
C:HIS80
|
4.8
|
35.3
|
1.0
|
|
NZ
|
C:LYS136
|
4.8
|
37.9
|
1.0
|
|
C
|
C:LYS136
|
4.9
|
35.9
|
1.0
|
|
CD2
|
C:HIS46
|
4.9
|
39.0
|
1.0
|
|
C
|
C:HIS71
|
4.9
|
38.3
|
1.0
|
|
Zinc binding site 4 out
of 14 in 7fb9
Go back to
Zinc Binding Sites List in 7fb9
Zinc binding site 4 out
of 14 in the Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn201
b:35.9
occ:1.00
|
OD1
|
D:ASP83
|
2.0
|
35.4
|
1.0
|
|
ND1
|
D:HIS71
|
2.1
|
38.1
|
1.0
|
|
ND1
|
D:HIS80
|
2.2
|
36.0
|
1.0
|
|
ND1
|
D:HIS63
|
2.3
|
35.2
|
1.0
|
|
OD2
|
D:ASP83
|
2.5
|
31.7
|
1.0
|
|
CG
|
D:ASP83
|
2.6
|
36.3
|
1.0
|
|
CE1
|
D:HIS71
|
3.0
|
36.6
|
1.0
|
|
CE1
|
D:HIS80
|
3.0
|
36.7
|
1.0
|
|
CE1
|
D:HIS63
|
3.2
|
35.6
|
1.0
|
|
CG
|
D:HIS80
|
3.2
|
33.1
|
1.0
|
|
CG
|
D:HIS71
|
3.2
|
40.0
|
1.0
|
|
CG
|
D:HIS63
|
3.3
|
35.8
|
1.0
|
|
CB
|
D:HIS80
|
3.6
|
32.4
|
1.0
|
|
CB
|
D:HIS71
|
3.7
|
37.2
|
1.0
|
|
CB
|
D:HIS63
|
3.7
|
39.4
|
1.0
|
|
O
|
D:LYS136
|
3.8
|
37.0
|
1.0
|
|
CA
|
D:HIS71
|
4.0
|
37.2
|
1.0
|
|
CB
|
D:ASP83
|
4.1
|
38.5
|
1.0
|
|
NE2
|
D:HIS80
|
4.1
|
32.3
|
1.0
|
|
NE2
|
D:HIS71
|
4.1
|
38.1
|
1.0
|
|
CD2
|
D:HIS80
|
4.2
|
37.8
|
1.0
|
|
CD2
|
D:HIS71
|
4.3
|
37.6
|
1.0
|
|
NE2
|
D:HIS63
|
4.3
|
37.2
|
1.0
|
|
CD2
|
D:HIS63
|
4.4
|
36.2
|
1.0
|
|
N
|
D:HIS80
|
4.7
|
39.0
|
1.0
|
|
CA
|
D:ASP83
|
4.7
|
38.5
|
1.0
|
|
N
|
D:GLY72
|
4.7
|
36.6
|
1.0
|
|
CA
|
D:HIS80
|
4.8
|
36.2
|
1.0
|
|
C
|
D:LYS136
|
4.8
|
44.9
|
1.0
|
|
C
|
D:HIS71
|
4.9
|
38.6
|
1.0
|
|
N
|
D:HIS71
|
5.0
|
41.1
|
1.0
|
|
Zinc binding site 5 out
of 14 in 7fb9
Go back to
Zinc Binding Sites List in 7fb9
Zinc binding site 5 out
of 14 in the Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn201
b:35.3
occ:1.00
|
OD1
|
E:ASP83
|
2.1
|
38.3
|
1.0
|
|
ND1
|
E:HIS71
|
2.2
|
38.0
|
1.0
|
|
ND1
|
E:HIS80
|
2.3
|
36.6
|
1.0
|
|
ND1
|
E:HIS63
|
2.3
|
41.6
|
1.0
|
|
OD2
|
E:ASP83
|
2.6
|
32.9
|
1.0
|
|
CG
|
E:ASP83
|
2.7
|
36.7
|
1.0
|
|
CE1
|
E:HIS80
|
3.0
|
38.6
|
1.0
|
|
CE1
|
E:HIS71
|
3.1
|
39.2
|
1.0
|
|
CG
|
E:HIS80
|
3.1
|
37.1
|
1.0
|
|
CG
|
E:HIS63
|
3.2
|
38.1
|
1.0
|
|
CG
|
E:HIS71
|
3.3
|
37.5
|
1.0
|
|
CE1
|
E:HIS63
|
3.4
|
35.8
|
1.0
|
|
CB
|
E:HIS63
|
3.4
|
35.7
|
1.0
|
|
CB
|
E:HIS80
|
3.5
|
34.1
|
1.0
|
|
CB
|
E:HIS71
|
3.7
|
41.2
|
1.0
|
|
O
|
E:LYS136
|
4.0
|
39.6
|
1.0
|
|
NE2
|
E:HIS80
|
4.0
|
42.0
|
1.0
|
|
CA
|
E:HIS71
|
4.0
|
40.1
|
1.0
|
|
CD2
|
E:HIS80
|
4.0
|
38.9
|
1.0
|
|
CB
|
E:ASP83
|
4.1
|
33.2
|
1.0
|
|
NE2
|
E:HIS71
|
4.2
|
38.3
|
1.0
|
|
CD2
|
E:HIS71
|
4.3
|
35.9
|
1.0
|
|
CD2
|
E:HIS63
|
4.4
|
35.5
|
1.0
|
|
NE2
|
E:HIS63
|
4.4
|
38.6
|
1.0
|
|
CA
|
E:ASP83
|
4.7
|
31.6
|
1.0
|
|
N
|
E:HIS80
|
4.7
|
37.0
|
1.0
|
|
CA
|
E:HIS80
|
4.8
|
33.9
|
1.0
|
|
N
|
E:GLY72
|
4.9
|
37.4
|
1.0
|
|
CA
|
E:HIS63
|
4.9
|
33.7
|
1.0
|
|
N
|
E:HIS71
|
5.0
|
39.0
|
1.0
|
|
Zinc binding site 6 out
of 14 in 7fb9
Go back to
Zinc Binding Sites List in 7fb9
Zinc binding site 6 out
of 14 in the Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Zn201
b:35.8
occ:1.00
|
OD1
|
F:ASP83
|
2.0
|
34.8
|
1.0
|
|
ND1
|
F:HIS80
|
2.1
|
37.7
|
1.0
|
|
ND1
|
F:HIS71
|
2.2
|
38.6
|
1.0
|
|
ND1
|
F:HIS63
|
2.2
|
33.8
|
1.0
|
|
CE1
|
F:HIS71
|
2.8
|
37.8
|
1.0
|
|
CG
|
F:ASP83
|
2.9
|
36.7
|
1.0
|
|
CE1
|
F:HIS80
|
2.9
|
39.2
|
1.0
|
|
OD2
|
F:ASP83
|
3.0
|
36.8
|
1.0
|
|
CG
|
F:HIS63
|
3.1
|
30.2
|
1.0
|
|
CG
|
F:HIS80
|
3.2
|
37.7
|
1.0
|
|
CE1
|
F:HIS63
|
3.2
|
37.3
|
1.0
|
|
CB
|
F:HIS63
|
3.2
|
31.4
|
1.0
|
|
CG
|
F:HIS71
|
3.4
|
38.0
|
1.0
|
|
O
|
F:LYS136
|
3.6
|
45.4
|
1.0
|
|
CB
|
F:HIS80
|
3.6
|
39.2
|
1.0
|
|
CB
|
F:HIS71
|
3.9
|
41.5
|
1.0
|
|
NE2
|
F:HIS80
|
4.0
|
41.6
|
1.0
|
|
NE2
|
F:HIS71
|
4.1
|
38.6
|
1.0
|
|
CD2
|
F:HIS80
|
4.2
|
41.1
|
1.0
|
|
CD2
|
F:HIS63
|
4.2
|
33.3
|
1.0
|
|
NE2
|
F:HIS63
|
4.3
|
38.8
|
1.0
|
|
CB
|
F:ASP83
|
4.3
|
37.5
|
1.0
|
|
CD2
|
F:HIS71
|
4.3
|
39.5
|
1.0
|
|
CA
|
F:HIS71
|
4.3
|
43.5
|
1.0
|
|
C
|
F:LYS136
|
4.6
|
43.8
|
1.0
|
|
CD2
|
F:HIS46
|
4.7
|
34.3
|
1.0
|
|
CA
|
F:ASP83
|
4.7
|
37.6
|
1.0
|
|
CA
|
F:HIS63
|
4.8
|
31.4
|
1.0
|
|
N
|
F:HIS80
|
4.8
|
43.4
|
1.0
|
|
CA
|
F:HIS80
|
4.8
|
37.3
|
1.0
|
|
N
|
F:ASP83
|
5.0
|
37.9
|
1.0
|
|
Zinc binding site 7 out
of 14 in 7fb9
Go back to
Zinc Binding Sites List in 7fb9
Zinc binding site 7 out
of 14 in the Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn201
b:36.6
occ:1.00
|
OD1
|
G:ASP83
|
2.1
|
36.3
|
1.0
|
|
ND1
|
G:HIS71
|
2.1
|
33.3
|
1.0
|
|
ND1
|
G:HIS80
|
2.2
|
38.1
|
1.0
|
|
ND1
|
G:HIS63
|
2.3
|
36.9
|
1.0
|
|
OD2
|
G:ASP83
|
2.8
|
36.6
|
1.0
|
|
CG
|
G:ASP83
|
2.8
|
37.3
|
1.0
|
|
CE1
|
G:HIS80
|
2.9
|
38.0
|
1.0
|
|
CG
|
G:HIS80
|
3.1
|
40.0
|
1.0
|
|
CG
|
G:HIS71
|
3.1
|
33.6
|
1.0
|
|
CE1
|
G:HIS71
|
3.1
|
33.5
|
1.0
|
|
CE1
|
G:HIS63
|
3.3
|
34.5
|
1.0
|
|
CG
|
G:HIS63
|
3.3
|
37.1
|
1.0
|
|
CB
|
G:HIS71
|
3.4
|
37.5
|
1.0
|
|
CB
|
G:HIS80
|
3.6
|
36.8
|
1.0
|
|
O
|
G:LYS136
|
3.6
|
34.7
|
1.0
|
|
CB
|
G:HIS63
|
3.6
|
36.2
|
1.0
|
|
CA
|
G:HIS71
|
3.7
|
38.5
|
1.0
|
|
NE2
|
G:HIS80
|
3.9
|
39.8
|
1.0
|
|
CD2
|
G:HIS80
|
4.0
|
41.2
|
1.0
|
|
NE2
|
G:HIS71
|
4.2
|
34.3
|
1.0
|
|
CD2
|
G:HIS71
|
4.2
|
32.4
|
1.0
|
|
CB
|
G:ASP83
|
4.3
|
33.9
|
1.0
|
|
NE2
|
G:HIS63
|
4.4
|
39.7
|
1.0
|
|
CD2
|
G:HIS63
|
4.4
|
38.8
|
1.0
|
|
C
|
G:LYS136
|
4.6
|
34.3
|
1.0
|
|
N
|
G:HIS80
|
4.6
|
42.7
|
1.0
|
|
N
|
G:GLY72
|
4.7
|
40.0
|
1.0
|
|
N
|
G:HIS71
|
4.7
|
43.3
|
1.0
|
|
CA
|
G:HIS80
|
4.7
|
41.3
|
1.0
|
|
C
|
G:HIS71
|
4.7
|
39.1
|
1.0
|
|
CA
|
G:ASP83
|
4.8
|
32.5
|
1.0
|
|
CA
|
G:THR137
|
4.8
|
36.3
|
1.0
|
|
Zinc binding site 8 out
of 14 in 7fb9
Go back to
Zinc Binding Sites List in 7fb9
Zinc binding site 8 out
of 14 in the Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Zn201
b:39.0
occ:1.00
|
OD1
|
H:ASP83
|
2.0
|
37.8
|
1.0
|
|
ND1
|
H:HIS71
|
2.1
|
37.7
|
1.0
|
|
ND1
|
H:HIS63
|
2.1
|
41.9
|
1.0
|
|
ND1
|
H:HIS80
|
2.2
|
48.1
|
1.0
|
|
CG
|
H:ASP83
|
2.7
|
39.9
|
1.0
|
|
OD2
|
H:ASP83
|
2.8
|
38.0
|
1.0
|
|
CE1
|
H:HIS71
|
2.9
|
36.8
|
1.0
|
|
CE1
|
H:HIS80
|
3.0
|
44.2
|
1.0
|
|
CE1
|
H:HIS63
|
3.1
|
41.2
|
1.0
|
|
CG
|
H:HIS80
|
3.1
|
47.9
|
1.0
|
|
CG
|
H:HIS63
|
3.2
|
38.3
|
1.0
|
|
CG
|
H:HIS71
|
3.2
|
37.4
|
1.0
|
|
O
|
H:LYS136
|
3.3
|
35.0
|
1.0
|
|
CB
|
H:HIS63
|
3.5
|
40.5
|
1.0
|
|
CB
|
H:HIS80
|
3.6
|
45.1
|
1.0
|
|
CB
|
H:HIS71
|
3.7
|
41.5
|
1.0
|
|
NE2
|
H:HIS71
|
4.1
|
40.6
|
1.0
|
|
NE2
|
H:HIS80
|
4.1
|
47.4
|
1.0
|
|
CA
|
H:HIS71
|
4.1
|
39.6
|
1.0
|
|
CD2
|
H:HIS80
|
4.2
|
47.6
|
1.0
|
|
CB
|
H:ASP83
|
4.2
|
41.6
|
1.0
|
|
NE2
|
H:HIS63
|
4.2
|
41.8
|
1.0
|
|
CD2
|
H:HIS71
|
4.2
|
36.3
|
1.0
|
|
CD2
|
H:HIS63
|
4.3
|
38.6
|
1.0
|
|
C
|
H:LYS136
|
4.5
|
36.2
|
1.0
|
|
CD2
|
H:HIS46
|
4.7
|
41.5
|
1.0
|
|
CA
|
H:ASP83
|
4.7
|
44.2
|
1.0
|
|
N
|
H:HIS80
|
4.7
|
48.0
|
1.0
|
|
CA
|
H:HIS80
|
4.8
|
47.0
|
1.0
|
|
N
|
H:ASP83
|
4.9
|
44.0
|
1.0
|
|
Zinc binding site 9 out
of 14 in 7fb9
Go back to
Zinc Binding Sites List in 7fb9
Zinc binding site 9 out
of 14 in the Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn201
b:38.6
occ:1.00
|
OD1
|
I:ASP83
|
2.1
|
35.2
|
1.0
|
|
ND1
|
I:HIS80
|
2.1
|
38.5
|
1.0
|
|
ND1
|
I:HIS71
|
2.2
|
40.2
|
1.0
|
|
ND1
|
I:HIS63
|
2.5
|
44.1
|
1.0
|
|
CG
|
I:ASP83
|
2.8
|
36.4
|
1.0
|
|
CE1
|
I:HIS80
|
2.9
|
39.4
|
1.0
|
|
OD2
|
I:ASP83
|
2.9
|
34.3
|
1.0
|
|
CG
|
I:HIS80
|
3.1
|
34.4
|
1.0
|
|
CE1
|
I:HIS71
|
3.1
|
38.6
|
1.0
|
|
CG
|
I:HIS71
|
3.2
|
38.3
|
1.0
|
|
CG
|
I:HIS63
|
3.4
|
40.0
|
1.0
|
|
CB
|
I:HIS63
|
3.4
|
38.2
|
1.0
|
|
CB
|
I:HIS80
|
3.5
|
36.4
|
1.0
|
|
CE1
|
I:HIS63
|
3.6
|
40.8
|
1.0
|
|
CB
|
I:HIS71
|
3.6
|
39.0
|
1.0
|
|
O
|
I:LYS136
|
3.7
|
41.8
|
1.0
|
|
NE2
|
I:HIS80
|
3.9
|
39.0
|
1.0
|
|
CD2
|
I:HIS80
|
4.0
|
36.0
|
1.0
|
|
CA
|
I:HIS71
|
4.0
|
42.2
|
1.0
|
|
NE2
|
I:HIS71
|
4.2
|
36.9
|
1.0
|
|
CB
|
I:ASP83
|
4.3
|
35.4
|
1.0
|
|
CD2
|
I:HIS71
|
4.3
|
36.3
|
1.0
|
|
CD2
|
I:HIS63
|
4.6
|
42.9
|
1.0
|
|
NE2
|
I:HIS63
|
4.6
|
45.2
|
1.0
|
|
N
|
I:HIS80
|
4.7
|
33.1
|
1.0
|
|
C
|
I:LYS136
|
4.7
|
43.2
|
1.0
|
|
CA
|
I:HIS80
|
4.7
|
33.2
|
1.0
|
|
CA
|
I:ASP83
|
4.7
|
38.8
|
1.0
|
|
N
|
I:GLY72
|
4.9
|
36.0
|
1.0
|
|
N
|
I:ASP83
|
4.9
|
37.3
|
1.0
|
|
CA
|
I:HIS63
|
5.0
|
38.1
|
1.0
|
|
N
|
I:HIS71
|
5.0
|
40.2
|
1.0
|
|
CA
|
I:THR137
|
5.0
|
41.4
|
1.0
|
|
Zinc binding site 10 out
of 14 in 7fb9
Go back to
Zinc Binding Sites List in 7fb9
Zinc binding site 10 out
of 14 in the Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn201
b:43.8
occ:1.00
|
OD1
|
J:ASP83
|
2.0
|
38.8
|
1.0
|
|
ND1
|
J:HIS71
|
2.1
|
35.1
|
1.0
|
|
ND1
|
J:HIS80
|
2.2
|
35.6
|
1.0
|
|
ND1
|
J:HIS63
|
2.3
|
32.9
|
1.0
|
|
CG
|
J:ASP83
|
2.8
|
37.3
|
1.0
|
|
OD2
|
J:ASP83
|
2.8
|
39.0
|
1.0
|
|
CE1
|
J:HIS80
|
2.9
|
38.2
|
1.0
|
|
CE1
|
J:HIS71
|
2.9
|
34.7
|
1.0
|
|
CE1
|
J:HIS63
|
3.1
|
37.0
|
1.0
|
|
CG
|
J:HIS71
|
3.2
|
33.9
|
1.0
|
|
CG
|
J:HIS80
|
3.3
|
36.9
|
1.0
|
|
CG
|
J:HIS63
|
3.3
|
31.2
|
1.0
|
|
O
|
J:LYS136
|
3.4
|
31.8
|
1.0
|
|
CB
|
J:HIS71
|
3.6
|
36.5
|
1.0
|
|
CB
|
J:HIS63
|
3.7
|
33.6
|
1.0
|
|
CB
|
J:HIS80
|
3.8
|
39.3
|
1.0
|
|
NE2
|
J:HIS80
|
4.0
|
37.9
|
1.0
|
|
CA
|
J:HIS71
|
4.1
|
37.6
|
1.0
|
|
NE2
|
J:HIS71
|
4.1
|
36.1
|
1.0
|
|
CB
|
J:ASP83
|
4.2
|
36.6
|
1.0
|
|
CD2
|
J:HIS80
|
4.2
|
40.6
|
1.0
|
|
CD2
|
J:HIS71
|
4.2
|
33.5
|
1.0
|
|
NE2
|
J:HIS63
|
4.3
|
42.7
|
1.0
|
|
CD2
|
J:HIS63
|
4.4
|
35.6
|
1.0
|
|
C
|
J:LYS136
|
4.5
|
37.6
|
1.0
|
|
CD2
|
J:HIS46
|
4.6
|
39.2
|
1.0
|
|
CA
|
J:ASP83
|
4.7
|
35.8
|
1.0
|
|
CA
|
J:THR137
|
4.8
|
38.4
|
1.0
|
|
NE2
|
J:HIS46
|
4.9
|
42.6
|
1.0
|
|
N
|
J:GLY72
|
4.9
|
39.7
|
1.0
|
|
N
|
J:HIS80
|
4.9
|
35.8
|
1.0
|
|
CA
|
J:HIS80
|
5.0
|
37.7
|
1.0
|
|
N
|
J:ASP83
|
5.0
|
35.8
|
1.0
|
|
Reference:
Y.Baek,
T.G.Woo,
J.Ahn,
D.Lee,
Y.Kwon,
B.J.Park,
N.C.Ha.
Structural Analysis of the Overoxidized Cu/Zn-Superoxide Dismutase in Ros-Induced Als Filament Formation. Commun Biol V. 5 1085 2022.
ISSN: ESSN 2399-3642
PubMed: 36224351
DOI: 10.1038/S42003-022-04017-0
Page generated: Tue Oct 29 20:18:12 2024
|
