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Zinc in PDB 7fac: Crystal Structure of C-Terminus of the Non-Structural Protein 2 From Sars Coronavirus

Protein crystallography data

The structure of Crystal Structure of C-Terminus of the Non-Structural Protein 2 From Sars Coronavirus, PDB code: 7fac was solved by Y.Y.Li, Z.L.Ren, Z.H.Bao, Z.H.Ming, L.M.Yan, Z.Y.Lou, Z.H.Rao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.93 / 2.71
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 112.834, 112.834, 91.084, 90, 90, 120
R / Rfree (%) 19.7 / 25.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of C-Terminus of the Non-Structural Protein 2 From Sars Coronavirus (pdb code 7fac). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of C-Terminus of the Non-Structural Protein 2 From Sars Coronavirus, PDB code: 7fac:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7fac

Go back to Zinc Binding Sites List in 7fac
Zinc binding site 1 out of 2 in the Crystal Structure of C-Terminus of the Non-Structural Protein 2 From Sars Coronavirus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of C-Terminus of the Non-Structural Protein 2 From Sars Coronavirus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:79.2
occ:1.00
SG A:CYS50 1.9 79.8 1.0
SG A:CYS32 2.5 77.9 1.0
CB A:CYS53 2.8 69.2 1.0
CB A:CYS32 2.9 93.9 1.0
CB A:CYS50 3.0 81.0 1.0
CB A:CYS35 3.1 95.5 1.0
SG A:CYS35 3.3 77.4 1.0
N A:CYS53 3.6 82.1 1.0
CA A:CYS53 3.8 64.3 1.0
N A:CYS35 4.0 98.5 1.0
SG A:CYS53 4.0 52.8 1.0
CA A:CYS35 4.1 94.1 1.0
CA A:CYS50 4.2 76.4 1.0
OG1 A:THR55 4.3 91.2 1.0
CA A:CYS32 4.4 100.8 1.0
CB A:HIS52 4.5 60.3 1.0
C A:HIS52 4.8 66.9 1.0
C A:CYS53 4.8 65.8 1.0
N A:GLY54 4.9 76.3 1.0
C A:CYS35 4.9 96.8 1.0
C A:CYS32 4.9 92.6 1.0
N A:HIS52 5.0 66.8 1.0
C A:CYS50 5.0 70.4 1.0
O A:CYS32 5.0 98.6 1.0

Zinc binding site 2 out of 2 in 7fac

Go back to Zinc Binding Sites List in 7fac
Zinc binding site 2 out of 2 in the Crystal Structure of C-Terminus of the Non-Structural Protein 2 From Sars Coronavirus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of C-Terminus of the Non-Structural Protein 2 From Sars Coronavirus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn602

b:85.0
occ:1.00
NE2 A:HIS91 1.8 96.9 1.0
SG A:CYS79 2.1 74.2 1.0
SG A:CYS125 2.3 74.3 1.0
CE1 A:HIS91 2.6 104.3 1.0
CD2 A:HIS91 2.9 97.5 1.0
CD1 A:TYR96 2.9 70.1 1.0
SG A:CYS82 3.2 80.6 1.0
OH A:TYR122 3.4 77.8 1.0
CB A:TYR96 3.4 88.4 1.0
CG A:TYR96 3.5 74.1 1.0
CB A:CYS79 3.6 88.8 1.0
ND1 A:HIS91 3.7 111.9 1.0
CB A:CYS125 3.8 76.4 1.0
CG A:HIS91 3.9 104.3 1.0
CE1 A:TYR96 3.9 82.5 1.0
CB A:ALA81 4.0 82.5 1.0
CA A:TYR96 4.1 88.2 1.0
N A:CYS82 4.2 89.2 1.0
CZ A:TYR122 4.5 65.7 1.0
CB A:CYS82 4.5 87.6 1.0
CA A:CYS79 4.8 84.7 1.0
CA A:ALA81 4.8 88.3 1.0
CD2 A:TYR96 4.9 66.8 1.0
N A:TYR96 4.9 88.2 1.0
CA A:CYS82 4.9 90.3 1.0
CE1 A:TYR122 4.9 65.7 1.0
N A:ALA81 4.9 100.5 1.0
C A:ALA81 4.9 94.0 1.0

Reference:

Y.Y.Li, Z.H.Ming, L.M.Yan, Z.Y.Lou, Z.H.Rao. Crystal Structure of N-Terminus of the Non-Structural Protein 2 From Sars Coronavirus To Be Published.
Page generated: Tue Oct 29 20:16:08 2024

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