Zinc in PDB 6rdt: Cryo-Em Structure of Polytomella F-Atp Synthase, Rotary Substate 1E, Composite Map

All present enzymatic activity of Cryo-Em Structure of Polytomella F-Atp Synthase, Rotary Substate 1E, Composite Map:
7.1.2.2;

The structure of Cryo-Em Structure of Polytomella F-Atp Synthase, Rotary Substate 1E, Composite Map also contains other interesting chemical elements:

Magnesium

(Mg)

5 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Polytomella F-Atp Synthase, Rotary Substate 1E, Composite Map (pdb code 6rdt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Polytomella F-Atp Synthase, Rotary Substate 1E, Composite Map, PDB code: 6rdt:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Polytomella F-Atp Synthase, Rotary Substate 1E, Composite Map


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Polytomella F-Atp Synthase, Rotary Substate 1E, Composite Map within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn600 b:50.0 occ:1.00 NE2 M:HIS248 2.5 42.5 1.0 CE1 M:HIS248 2.9 42.5 1.0 NE2 M:HIS252 3.2 45.1 1.0 CE1 M:HIS252 3.3 45.1 1.0 CD1 6:LEU105 3.4 39.5 1.0 CD2 M:HIS248 3.7 42.5 1.0 OD1 6:ASP102 3.9 41.7 1.0 ND1 M:HIS248 4.2 42.5 1.0 CD2 M:HIS252 4.4 45.1 1.0 CG 6:ASP102 4.5 41.7 1.0 ND1 M:HIS252 4.5 45.1 1.0 CG M:HIS248 4.6 42.5 1.0 CG 6:LEU105 4.6 39.5 1.0 CB 6:LEU105 4.8 39.5 1.0 NE2 6:GLN93 4.8 34.4 1.0 CB 6:ASP102 4.9 41.7 1.0 CA 6:ASP102 5.0 41.7 1.0

B.J.Murphy, N.Klusch, J.Langer, D.J.Mills, O.Yildiz, W.Kuhlbrandt. Rotary Substates of Mitochondrial Atp Synthase Reveal the Basis of Flexible F1-Focoupling. Science V. 364 2019.
ISSN: ESSN 1095-9203
PubMed: 31221832
DOI: 10.1126/SCIENCE.AAW9128