Zinc in PDB 6rdd: Cryo-Em Structure of Polytomella F-Atp Synthase, Primary Rotary State 2, Monomer-Masked Refinement

The binding sites of Zinc atom in the Cryo-Em Structure of Polytomella F-Atp Synthase, Primary Rotary State 2, Monomer-Masked Refinement (pdb code 6rdd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Polytomella F-Atp Synthase, Primary Rotary State 2, Monomer-Masked Refinement, PDB code: 6rdd:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Polytomella F-Atp Synthase, Primary Rotary State 2, Monomer-Masked Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Polytomella F-Atp Synthase, Primary Rotary State 2, Monomer-Masked Refinement within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn600 b:50.0 occ:1.00 O M:HOH715 2.1 45.3 1.0 NE2 M:HIS248 2.3 42.5 1.0 O 6:HOH203 2.3 36.4 1.0 NE2 M:HIS252 2.5 45.1 1.0 CE1 M:HIS248 3.0 42.5 1.0 CE1 M:HIS252 3.3 45.1 1.0 CD2 M:HIS248 3.4 42.5 1.0 CD2 M:HIS252 3.6 45.1 1.0 CD1 6:LEU105 3.9 39.5 1.0 ND1 M:HIS248 4.2 42.5 1.0 CG M:HIS248 4.4 42.5 1.0 ND1 M:HIS252 4.5 45.1 1.0 O M:HOH704 4.6 33.7 1.0 CG M:HIS252 4.6 45.1 1.0 O 6:HOH204 4.8 40.6 1.0 CG 6:ASP102 4.9 41.7 1.0 OD2 6:ASP102 4.9 41.7 1.0 OD1 6:ASP102 5.0 41.7 1.0

B.J.Murphy, N.Klusch, J.Langer, D.J.Mills, O.Yildiz, W.Kuhlbrandt. Rotary Substates of Mitochondrial Atp Synthase Reveal the Basis of Flexible F1-Focoupling. Science V. 364 2019.
ISSN: ESSN 1095-9203
PubMed: 31221832
DOI: 10.1126/SCIENCE.AAW9128