Zinc in PDB 6cbt: Dnag Primase C-Terminal Domain Complex with Ssb C-Terminal Peptide

The structure of Dnag Primase C-Terminal Domain Complex with Ssb C-Terminal Peptide, PDB code: 6cbt was solved by A.J.Oakley, A.T.Y.Lo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.74 / 2.10
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	70.284, 115.841, 45.742, 90.00, 90.00, 90.00
R / Rfree (%)	20 / 22.9

The binding sites of Zinc atom in the Dnag Primase C-Terminal Domain Complex with Ssb C-Terminal Peptide (pdb code 6cbt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Dnag Primase C-Terminal Domain Complex with Ssb C-Terminal Peptide, PDB code: 6cbt:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Dnag Primase C-Terminal Domain Complex with Ssb C-Terminal Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Dnag Primase C-Terminal Domain Complex with Ssb C-Terminal Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:35.7 occ:1.00 NE2 A:HIS506 2.0 48.4 1.0 O A:HOH820 2.7 23.1 1.0 CE1 A:HIS506 2.8 47.0 1.0 CD2 A:HIS506 3.1 44.8 1.0 ND1 A:HIS506 4.0 46.4 1.0 CG A:HIS506 4.1 43.9 1.0 OG1 A:THR491 4.4 28.4 1.0 O A:HOH766 4.5 22.5 1.0

Zinc binding site 2 out of 3 in the Dnag Primase C-Terminal Domain Complex with Ssb C-Terminal Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Dnag Primase C-Terminal Domain Complex with Ssb C-Terminal Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn602 b:17.8 occ:1.00 O A:ACY603 2.0 19.9 1.0 NE2 A:HIS541 2.1 23.4 1.0 OD1 A:ASP537 2.1 24.3 1.0 OD2 A:ASP537 2.4 20.2 1.0 CG A:ASP537 2.6 21.6 1.0 C A:ACY603 2.9 27.0 1.0 CD2 A:HIS541 3.0 21.2 1.0 OXT A:ACY603 3.0 29.0 1.0 CE1 A:HIS541 3.1 22.6 1.0 O A:HOH739 3.3 35.4 1.0 O A:HOH753 4.1 27.3 1.0 CB A:ASP537 4.1 19.0 1.0 CG A:HIS541 4.2 21.4 1.0 ND1 A:HIS541 4.2 22.9 1.0 CH3 A:ACY603 4.3 26.0 1.0 O A:ASP537 4.6 21.0 1.0 C A:ASP537 4.8 18.5 1.0 CA A:ASP537 4.9 17.5 1.0

Zinc binding site 3 out of 3 in the Dnag Primase C-Terminal Domain Complex with Ssb C-Terminal Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Dnag Primase C-Terminal Domain Complex with Ssb C-Terminal Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn601 b:18.1 occ:1.00 NE2 B:HIS541 2.0 21.0 1.0 O B:ACY602 2.0 21.1 1.0 OD1 B:ASP537 2.2 22.4 1.0 OD2 B:ASP537 2.5 19.6 1.0 CG B:ASP537 2.6 20.6 1.0 C B:ACY602 2.9 24.6 1.0 CD2 B:HIS541 3.0 17.6 1.0 CE1 B:HIS541 3.1 20.2 1.0 OXT B:ACY602 3.1 21.6 1.0 O B:HOH722 3.3 40.9 1.0 O B:HOH706 3.7 37.3 1.0 CG B:HIS541 4.1 18.7 1.0 ND1 B:HIS541 4.1 20.0 1.0 CB B:ASP537 4.1 18.4 1.0 CH3 B:ACY602 4.3 24.5 1.0 O B:ASP537 4.7 20.9 1.0 C B:ASP537 4.9 19.0 1.0 CA B:ASP537 4.9 16.6 1.0

A.J.Oakley, A.T.Y.Lo. Dnag Primase C-Terminal Domain Complex with Ssb C-Terminal Peptide To Be Published.