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Zinc in PDB 6c9e: Crystal Structure of Cysteine Desulfurase From Legionella Pneumophila Philadelphia 1

Enzymatic activity of Crystal Structure of Cysteine Desulfurase From Legionella Pneumophila Philadelphia 1

All present enzymatic activity of Crystal Structure of Cysteine Desulfurase From Legionella Pneumophila Philadelphia 1:
2.8.1.7;

Protein crystallography data

The structure of Crystal Structure of Cysteine Desulfurase From Legionella Pneumophila Philadelphia 1, PDB code: 6c9e was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.69 / 1.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.400, 71.150, 113.470, 90.00, 102.36, 90.00
R / Rfree (%) 14 / 16.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Cysteine Desulfurase From Legionella Pneumophila Philadelphia 1 (pdb code 6c9e). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Cysteine Desulfurase From Legionella Pneumophila Philadelphia 1, PDB code: 6c9e:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6c9e

Go back to Zinc Binding Sites List in 6c9e
Zinc binding site 1 out of 2 in the Crystal Structure of Cysteine Desulfurase From Legionella Pneumophila Philadelphia 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Cysteine Desulfurase From Legionella Pneumophila Philadelphia 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:23.9
occ:0.63
ND1 A:HIS132 3.2 11.3 1.0
O B:HOH904 3.2 32.5 1.0
N B:GLU262 3.3 13.3 1.0
SG A:CYS372 3.4 20.0 1.0
O B:HOH633 3.6 33.5 1.0
CG1 B:ILE264 3.7 14.4 1.0
CD1 B:ILE264 3.7 14.7 1.0
CE1 A:HIS370 3.7 14.4 1.0
CA B:GLY261 3.8 13.3 1.0
CE1 A:HIS132 3.8 11.4 1.0
CB A:CYS372 4.0 14.6 1.0
C B:GLY261 4.0 12.6 1.0
CA A:CYS372 4.1 12.9 1.0
CA B:GLU262 4.2 13.0 1.0
CG A:HIS132 4.3 11.2 1.0
NE2 A:HIS370 4.6 18.9 1.0
ND1 A:HIS370 4.7 16.1 1.0
CB A:HIS132 4.7 11.8 1.0
OE2 B:GLU262 4.7 39.9 1.0
N A:CYS372 4.8 12.4 1.0
CD B:GLU262 4.8 30.8 1.0
O A:HOH950 4.9 32.2 1.0
OE1 B:GLU262 5.0 31.3 1.0
NE B:ARG64 5.0 38.3 1.0

Zinc binding site 2 out of 2 in 6c9e

Go back to Zinc Binding Sites List in 6c9e
Zinc binding site 2 out of 2 in the Crystal Structure of Cysteine Desulfurase From Legionella Pneumophila Philadelphia 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Cysteine Desulfurase From Legionella Pneumophila Philadelphia 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn501

b:24.2
occ:0.64
O A:HOH878 3.1 36.1 1.0
ND1 B:HIS132 3.2 11.7 1.0
N A:GLU262 3.3 12.1 1.0
SG B:CYS372 3.3 19.8 1.0
CG1 A:ILE264 3.7 10.4 1.0
CD1 A:ILE264 3.7 14.5 1.0
O A:HOH649 3.7 30.9 1.0
CE1 B:HIS370 3.7 14.2 1.0
CA A:GLY261 3.8 9.9 1.0
CE1 B:HIS132 3.8 11.9 1.0
CB B:CYS372 4.0 12.8 1.0
C A:GLY261 4.0 11.4 1.0
CA B:CYS372 4.1 11.7 1.0
CA A:GLU262 4.2 13.7 1.0
CG B:HIS132 4.3 10.4 1.0
NE2 B:HIS370 4.5 17.5 1.0
ND1 B:HIS370 4.6 12.3 1.0
OE1 A:GLU262 4.6 38.7 1.0
CB B:HIS132 4.7 9.6 1.0
CD A:GLU262 4.8 29.2 1.0
N B:CYS372 4.8 12.1 1.0
O B:HOH1001 4.9 29.9 1.0
O B:HOH923 4.9 30.7 1.0
OE2 A:GLU262 5.0 32.1 1.0
NE A:ARG64 5.0 29.1 1.0

Reference:

J.Abendroth, S.L.Delker, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Cysteine Desulfurase From Legionella Pneumophila Philadelphia 1 To Be Published.
Page generated: Mon Oct 28 18:35:43 2024

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