Zinc in PDB 6c4v: 1.9 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (Residues 1350-1461) of Polyketide Synthase PKS13 From Mycobacterium Tuberculosis

Protein crystallography data

The structure of 1.9 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (Residues 1350-1461) of Polyketide Synthase PKS13 From Mycobacterium Tuberculosis, PDB code: 6c4v was solved by G.Minasov, J.S.Brunzelle, L.Shuvalova, I.Dubrovska, O.Kiryukhina, S.Grimshaw, K.Kwon, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.09 / 1.90
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 58.189, 58.189, 101.683, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 21.7

Zinc Binding Sites:

The binding sites of Zinc atom in the 1.9 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (Residues 1350-1461) of Polyketide Synthase PKS13 From Mycobacterium Tuberculosis (pdb code 6c4v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the 1.9 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (Residues 1350-1461) of Polyketide Synthase PKS13 From Mycobacterium Tuberculosis, PDB code: 6c4v:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 6c4v

Go back to Zinc Binding Sites List in 6c4v
Zinc binding site 1 out of 3 in the 1.9 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (Residues 1350-1461) of Polyketide Synthase PKS13 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1.9 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (Residues 1350-1461) of Polyketide Synthase PKS13 From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1501

b:47.3
occ:1.00
OD2 A:ASP1372 1.9 46.2 1.0
CG A:ASP1372 2.7 46.6 1.0
OD1 A:ASP1372 2.8 44.5 1.0
O A:HOH1633 4.1 52.7 1.0
CB A:ASP1372 4.2 47.7 1.0
ND2 A:ASN1400 4.4 41.8 1.0
CA A:GLY1396 4.7 38.0 1.0
O A:GLY1396 4.9 40.2 1.0
C A:GLY1396 5.0 38.6 1.0

Zinc binding site 2 out of 3 in 6c4v

Go back to Zinc Binding Sites List in 6c4v
Zinc binding site 2 out of 3 in the 1.9 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (Residues 1350-1461) of Polyketide Synthase PKS13 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 1.9 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (Residues 1350-1461) of Polyketide Synthase PKS13 From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1502

b:59.4
occ:0.50
ZN A:ZN1502 0.0 59.4 0.5
ZN A:ZN1502 1.5 61.2 0.5
OE1 A:GLU1437 1.8 57.5 1.0
OD2 A:ASP1441 2.3 51.9 1.0
OD1 A:ASP1441 2.6 52.8 1.0
CG A:ASP1441 2.8 48.3 1.0
CD A:GLU1437 2.9 51.1 1.0
OE2 A:GLU1437 3.4 53.8 1.0
O A:HOH1613 3.7 49.3 0.5
O A:HOH1617 4.1 45.7 1.0
CG A:GLU1437 4.2 48.6 1.0
CB A:ASP1441 4.3 42.4 1.0
O A:GLU1437 4.6 37.8 1.0
NH1 A:ARG1444 4.6 45.9 1.0

Zinc binding site 3 out of 3 in 6c4v

Go back to Zinc Binding Sites List in 6c4v
Zinc binding site 3 out of 3 in the 1.9 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (Residues 1350-1461) of Polyketide Synthase PKS13 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of 1.9 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (Residues 1350-1461) of Polyketide Synthase PKS13 From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1502

b:61.2
occ:0.50
ZN A:ZN1502 0.0 61.2 0.5
ZN A:ZN1502 1.5 59.4 0.5
OD2 A:ASP1441 2.0 51.9 1.0
O A:HOH1613 2.2 49.3 0.5
OE1 A:GLU1437 2.2 57.5 1.0
OE2 A:GLU1437 2.7 53.8 1.0
CD A:GLU1437 2.8 51.1 1.0
CG A:ASP1441 3.1 48.3 1.0
OD1 A:ASP1441 3.5 52.8 1.0
CG A:GLU1437 4.3 48.6 1.0
CB A:ASP1441 4.4 42.4 1.0
O A:GLU1437 4.6 37.8 1.0
C A:GLU1437 5.0 37.1 1.0
O A:HOH1617 5.0 45.7 1.0

Reference:

G.Minasov, J.S.Brunzelle, L.Shuvalova, I.Dubrovska, O.Kiryukhina, S.Grimshaw, K.Kwon, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.9 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (Residues 1350-1461) of Polyketide Synthase PKS13 From Mycobacterium Tuberculosis. To Be Published.
Page generated: Wed Dec 16 11:34:17 2020

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