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Zinc in PDB 6bv4: Crystal Structure of Porcine Aminopeptidase-N with Methionine

Enzymatic activity of Crystal Structure of Porcine Aminopeptidase-N with Methionine

All present enzymatic activity of Crystal Structure of Porcine Aminopeptidase-N with Methionine:
3.4.11.2;

Protein crystallography data

The structure of Crystal Structure of Porcine Aminopeptidase-N with Methionine, PDB code: 6bv4 was solved by L.Chen, Y.-L.Lin, F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.02
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 260.664, 62.871, 81.620, 90.00, 100.39, 90.00
R / Rfree (%) 20.5 / 24.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Porcine Aminopeptidase-N with Methionine (pdb code 6bv4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Porcine Aminopeptidase-N with Methionine, PDB code: 6bv4:

Zinc binding site 1 out of 1 in 6bv4

Go back to Zinc Binding Sites List in 6bv4
Zinc binding site 1 out of 1 in the Crystal Structure of Porcine Aminopeptidase-N with Methionine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Porcine Aminopeptidase-N with Methionine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1037

b:25.9
occ:1.00
OE2 A:GLU406 1.8 28.1 1.0
NE2 A:HIS387 2.0 27.3 1.0
NE2 A:HIS383 2.1 28.2 1.0
O A:HOH1281 2.2 27.1 1.0
CD A:GLU406 2.7 25.9 1.0
CD2 A:HIS387 2.9 25.9 1.0
OE1 A:GLU406 2.9 23.6 1.0
CD2 A:HIS383 3.0 27.3 1.0
CE1 A:HIS387 3.1 25.0 1.0
CE1 A:HIS383 3.1 26.7 1.0
OXT A:MET1024 3.3 30.9 1.0
C A:MET1024 4.0 38.3 1.0
CG A:HIS387 4.1 28.1 1.0
CB A:ALA409 4.1 28.1 1.0
ND1 A:HIS387 4.1 26.5 1.0
OE1 A:GLU350 4.1 21.8 1.0
CG A:GLU406 4.2 25.8 1.0
CG A:HIS383 4.2 27.8 1.0
ND1 A:HIS383 4.2 26.9 1.0
OE2 A:GLU384 4.3 28.6 1.0
N A:MET1024 4.3 32.8 1.0
CE2 A:TYR472 4.5 27.4 1.0
CA A:MET1024 4.5 33.5 1.0
CA A:GLU406 4.5 27.1 1.0
CD A:GLU350 4.6 28.0 1.0
CB A:GLU406 4.6 27.2 1.0
O A:MET1024 4.7 40.3 1.0
OE1 A:GLU384 4.7 26.5 1.0
OE2 A:GLU350 4.8 23.0 1.0
CD A:GLU384 4.9 25.7 1.0
OH A:TYR472 4.9 23.9 1.0

Reference:

S.Joshi, L.Chen, M.B.Winter, Y.L.Lin, Y.Yang, M.Shapovalova, P.M.Smith, C.Liu, F.Li, A.M.Lebeau. The Rational Design of Therapeutic Peptides For Aminopeptidase N Using A Substrate-Based Approach. Sci Rep V. 7 1424 2017.
ISSN: ESSN 2045-2322
PubMed: 28465619
DOI: 10.1038/S41598-017-01542-5
Page generated: Wed Dec 16 11:33:26 2020

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