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Zinc in PDB 6buy: Crystal Structure of Porcine Aminopeptidase-N with Glycine

Protein crystallography data

The structure of Crystal Structure of Porcine Aminopeptidase-N with Glycine, PDB code: 6buy was solved by L.Chen, Y.-L.Lin, F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 128.22 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 260.606, 62.733, 81.636, 90.00, 100.26, 90.00
R / Rfree (%) 19.7 / 24.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Porcine Aminopeptidase-N with Glycine (pdb code 6buy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Porcine Aminopeptidase-N with Glycine, PDB code: 6buy:

Zinc binding site 1 out of 1 in 6buy

Go back to Zinc Binding Sites List in 6buy
Zinc binding site 1 out of 1 in the Crystal Structure of Porcine Aminopeptidase-N with Glycine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Porcine Aminopeptidase-N with Glycine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1035

b:27.2
occ:1.00
OE2 A:GLU406 1.9 26.6 1.0
NE2 A:HIS383 2.0 27.4 1.0
O A:HOH1323 2.1 24.3 1.0
NE2 A:HIS387 2.2 25.9 1.0
CD A:GLU406 2.7 26.4 1.0
OE1 A:GLU406 2.9 24.4 1.0
CD2 A:HIS387 3.0 25.7 1.0
CD2 A:HIS383 3.0 26.3 1.0
CE1 A:HIS383 3.0 26.7 1.0
CE1 A:HIS387 3.2 25.4 1.0
OXT A:GLY1024 3.5 29.9 1.0
CB A:ALA409 4.1 27.2 1.0
OE1 A:GLU350 4.1 22.7 1.0
N A:GLY1024 4.1 30.4 1.0
ND1 A:HIS383 4.1 26.6 1.0
CG A:HIS383 4.1 27.7 1.0
C A:GLY1024 4.2 34.3 1.0
CG A:GLU406 4.2 26.1 1.0
CG A:HIS387 4.2 28.1 1.0
OE2 A:GLU384 4.2 26.8 1.0
ND1 A:HIS387 4.3 26.3 1.0
CE2 A:TYR472 4.5 27.7 1.0
OE1 A:GLU384 4.6 26.8 1.0
CD A:GLU350 4.6 26.5 1.0
CA A:GLU406 4.6 27.0 1.0
O A:GLY1024 4.6 37.0 1.0
CB A:GLU406 4.7 26.1 1.0
CD A:GLU384 4.8 26.6 1.0
CA A:GLY1024 4.8 34.0 1.0
OE2 A:GLU350 4.9 24.4 1.0
OH A:TYR472 4.9 22.8 1.0

Reference:

S.Joshi, L.Chen, M.B.Winter, Y.L.Lin, Y.Yang, M.Shapovalova, P.M.Smith, C.Liu, F.Li, A.M.Lebeau. The Rational Design of Therapeutic Peptides For Aminopeptidase N Using A Substrate-Based Approach. Sci Rep V. 7 1424 2017.
ISSN: ESSN 2045-2322
PubMed: 28465619
DOI: 10.1038/S41598-017-01542-5
Page generated: Wed Dec 16 11:33:19 2020

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