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Zinc in PDB 6bux: Crystal Structure of APOBEC3G Catalytic Domain Complex with Substrate Ssdna

Protein crystallography data

The structure of Crystal Structure of APOBEC3G Catalytic Domain Complex with Substrate Ssdna, PDB code: 6bux was solved by A.Maiti, H.Matsuo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.61 / 1.86
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.413, 47.237, 51.462, 90.00, 103.13, 90.00
R / Rfree (%) 17.9 / 21.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of APOBEC3G Catalytic Domain Complex with Substrate Ssdna (pdb code 6bux). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of APOBEC3G Catalytic Domain Complex with Substrate Ssdna, PDB code: 6bux:

Zinc binding site 1 out of 1 in 6bux

Go back to Zinc Binding Sites List in 6bux
Zinc binding site 1 out of 1 in the Crystal Structure of APOBEC3G Catalytic Domain Complex with Substrate Ssdna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of APOBEC3G Catalytic Domain Complex with Substrate Ssdna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:31.4
occ:1.00
ND1 A:HIS257 2.1 27.7 1.0
SG A:CYS291 2.2 41.6 1.0
SG A:CYS288 2.3 33.6 1.0
O B:HOH110 2.4 25.4 1.0
CB A:CYS291 3.0 39.5 1.0
CE1 A:HIS257 3.0 29.0 1.0
CG A:HIS257 3.1 29.5 1.0
CB A:HIS257 3.4 27.4 1.0
CB A:CYS288 3.5 25.4 1.0
N A:CYS291 3.9 33.6 1.0
CA A:CYS291 4.1 33.4 1.0
N A:CYS288 4.1 27.9 1.0
NE2 A:HIS257 4.2 25.6 1.0
CD2 A:HIS257 4.2 28.1 1.0
CA A:CYS288 4.3 29.2 1.0
C4 B:DC0 4.6 28.3 1.0
N3 B:DC0 4.7 25.2 1.0
O B:HOH102 4.7 28.2 1.0
N4 B:DC0 4.7 33.4 1.0
C A:CYS288 4.8 27.7 1.0
O A:CYS288 4.8 28.2 1.0
CA A:HIS257 5.0 29.0 1.0
C A:SER290 5.0 33.2 1.0
C5 B:DC0 5.0 26.7 1.0

Reference:

A.Maiti, W.Myint, T.Kanai, K.Delviks-Frankenberry, C.Sierra Rodriguez, V.K.Pathak, C.A.Schiffer, H.Matsuo. Crystal Structure of the Catalytic Domain of Hiv-1 Restriction Factor APOBEC3G in Complex with Ssdna. Nat Commun V. 9 2460 2018.
ISSN: ESSN 2041-1723
PubMed: 29941968
DOI: 10.1038/S41467-018-04872-8
Page generated: Wed Dec 16 11:33:17 2020

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