Zinc in PDB 5xbv: Crystal Structure of WSS1 Mutant From Saccharomyces Cerevisiae

Protein crystallography data

The structure of Crystal Structure of WSS1 Mutant From Saccharomyces Cerevisiae, PDB code: 5xbv was solved by Y.H.Dong, X.Y.Yang, W.J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.88 / 1.80
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 86.202, 86.202, 36.287, 90.00, 90.00, 120.00
R / Rfree (%) 17.3 / 20

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of WSS1 Mutant From Saccharomyces Cerevisiae (pdb code 5xbv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of WSS1 Mutant From Saccharomyces Cerevisiae, PDB code: 5xbv:

Zinc binding site 1 out of 1 in 5xbv

Go back to Zinc Binding Sites List in 5xbv
Zinc binding site 1 out of 1 in the Crystal Structure of WSS1 Mutant From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of WSS1 Mutant From Saccharomyces Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:23.2
occ:1.00
NE2 A:HIS125 2.1 25.3 1.0
NE2 A:HIS119 2.1 20.1 1.0
CE1 A:HIS115 2.2 23.3 1.0
O A:HOH400 2.2 10.4 1.0
CD2 A:HIS125 3.1 25.4 1.0
CE1 A:HIS119 3.1 19.4 1.0
CE1 A:HIS125 3.1 25.8 1.0
CD2 A:HIS119 3.1 20.5 1.0
NE2 A:HIS115 3.2 23.3 1.0
ND1 A:HIS115 3.2 22.2 1.0
CZ A:PHE129 4.2 20.8 1.0
ND1 A:HIS119 4.2 20.8 1.0
ND1 A:HIS125 4.2 26.5 1.0
CG A:HIS125 4.2 24.5 1.0
CG A:HIS119 4.3 20.4 1.0
NE2 A:GLN116 4.3 20.7 1.0
CD2 A:HIS115 4.3 24.5 1.0
CG A:HIS115 4.3 23.1 1.0
O A:HOH404 4.4 44.0 1.0
O A:HOH314 4.4 45.5 1.0
CE2 A:PHE129 4.5 20.6 1.0
O A:HOH338 4.7 19.8 1.0
O A:HOH406 4.8 34.2 1.0
OE1 A:GLN116 4.8 20.4 1.0
CE1 A:PHE129 4.9 20.8 1.0
CD A:GLN116 4.9 20.6 1.0
O A:HOH401 5.0 49.8 1.0

Reference:

Y.H.Dong, X.Y.Yang, W.J.Wang. Crystal Structure of WSS1 Mutant From Saccharomyces Cerevisiae To Be Published.
Page generated: Wed Dec 16 11:19:53 2020

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