Zinc in PDB 5x6t: N-Terminal Zinc Finger of Synaptotagmin-Like Protein 4

The binding sites of Zinc atom in the N-Terminal Zinc Finger of Synaptotagmin-Like Protein 4 (pdb code 5x6t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the N-Terminal Zinc Finger of Synaptotagmin-Like Protein 4, PDB code: 5x6t:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the N-Terminal Zinc Finger of Synaptotagmin-Like Protein 4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of N-Terminal Zinc Finger of Synaptotagmin-Like Protein 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS30 2.3 0.0 1.0 SG A:CYS33 2.3 0.0 1.0 SG A:CYS5 2.3 0.0 1.0 SG A:CYS8 2.3 0.0 1.0 HB2 A:CYS33 3.0 0.0 1.0 H A:CYS30 3.1 0.0 1.0 CB A:CYS33 3.3 0.0 1.0 HB3 A:CYS8 3.3 0.0 1.0 HB2 A:CYS5 3.4 0.0 1.0 HB3 A:CYS30 3.4 0.0 1.0 CB A:CYS5 3.4 0.0 1.0 H A:CYS8 3.5 0.0 1.0 CB A:CYS8 3.5 0.0 1.0 CB A:CYS30 3.5 0.0 1.0 HB2 A:ARG7 3.6 0.0 1.0 HB3 A:CYS5 3.7 0.0 1.0 N A:CYS30 3.8 0.0 1.0 HG13 A:VAL29 4.0 0.0 1.0 H A:CYS33 4.0 0.0 1.0 N A:CYS8 4.0 0.0 1.0 HB3 A:CYS33 4.0 0.0 1.0 HB3 A:ASP32 4.1 0.0 1.0 HB2 A:GLU10 4.2 0.0 1.0 N A:CYS33 4.2 0.0 1.0 CA A:CYS30 4.2 0.0 1.0 HA A:VAL29 4.3 0.0 1.0 HB2 A:CYS8 4.3 0.0 1.0 H A:ARG7 4.3 0.0 1.0 HB2 A:CYS30 4.4 0.0 1.0 CA A:CYS33 4.4 0.0 1.0 CA A:CYS8 4.4 0.0 1.0 H A:ASP32 4.5 0.0 1.0 CB A:ARG7 4.7 0.0 1.0 H A:GLN9 4.8 0.0 1.0 HA A:CYS33 4.8 0.0 1.0 C A:VAL29 4.8 0.0 1.0 CA A:CYS5 4.8 0.0 1.0 H A:GLU10 4.8 0.0 1.0 C A:CYS30 4.9 0.0 1.0 C A:ARG7 4.9 0.0 1.0 C A:ASP32 4.9 0.0 1.0 HA A:CYS5 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the N-Terminal Zinc Finger of Synaptotagmin-Like Protein 4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of N-Terminal Zinc Finger of Synaptotagmin-Like Protein 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:0.0 occ:1.00 SG A:CYS25 2.3 0.0 1.0 SG A:CYS44 2.3 0.0 1.0 SG A:CYS22 2.3 0.0 1.0 SG A:CYS47 2.4 0.0 1.0 HB2 A:CYS47 2.9 0.0 1.0 HB2 A:CYS25 3.0 0.0 1.0 HB3 A:CYS44 3.2 0.0 1.0 CB A:CYS47 3.3 0.0 1.0 CB A:CYS25 3.3 0.0 1.0 H A:CYS44 3.4 0.0 1.0 CB A:CYS44 3.4 0.0 1.0 CB A:CYS22 3.5 0.0 1.0 HB3 A:CYS22 3.5 0.0 1.0 HB2 A:CYS22 3.6 0.0 1.0 H A:CYS25 3.9 0.0 1.0 N A:CYS25 3.9 0.0 1.0 H A:CYS47 3.9 0.0 1.0 N A:CYS44 4.0 0.0 1.0 HB A:VAL46 4.0 0.0 1.0 HB3 A:CYS47 4.0 0.0 1.0 HD2 A:ARG43 4.1 0.0 1.0 HB3 A:CYS25 4.1 0.0 1.0 N A:CYS47 4.2 0.0 1.0 CA A:CYS25 4.2 0.0 1.0 HB2 A:CYS44 4.2 0.0 1.0 H A:GLY24 4.2 0.0 1.0 CA A:CYS44 4.3 0.0 1.0 HA3 A:GLY24 4.3 0.0 1.0 C A:GLY24 4.3 0.0 1.0 CA A:CYS47 4.3 0.0 1.0 HB3 A:ARG43 4.4 0.0 1.0 HA A:CYS47 4.7 0.0 1.0 HA A:CYS25 4.7 0.0 1.0 CA A:GLY24 4.7 0.0 1.0 HA A:ARG43 4.8 0.0 1.0 O A:GLY24 4.8 0.0 1.0 H A:VAL46 4.8 0.0 1.0 N A:GLY24 4.9 0.0 1.0 C A:CYS44 4.9 0.0 1.0 CA A:CYS22 4.9 0.0 1.0 C A:VAL46 4.9 0.0 1.0 O A:CYS44 4.9 0.0 1.0 C A:ARG43 5.0 0.0 1.0

K.Miyamoto, A.Nakatani, K.Saito. The Unique N-Terminal Zinc Finger of Synaptotagmin-Like Protein 4 Reveals Fyve Structure Protein Sci. V. 26 2451 2017.
ISSN: ESSN 1469-896X
PubMed: 28906046
DOI: 10.1002/PRO.3301