Zinc in PDB 5uyg: Yfea with Metal Bound to Site 2 - Zn Wavelength

The structure of Yfea with Metal Bound to Site 2 - Zn Wavelength, PDB code: 5uyg was solved by C.D.Radka, L.J.Delucas, S.G.Aller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.97 / 1.86
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	62.356, 66.036, 66.827, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 21.8

The binding sites of Zinc atom in the Yfea with Metal Bound to Site 2 - Zn Wavelength (pdb code 5uyg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Yfea with Metal Bound to Site 2 - Zn Wavelength, PDB code: 5uyg:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Yfea with Metal Bound to Site 2 - Zn Wavelength


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Yfea with Metal Bound to Site 2 - Zn Wavelength within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:28.5 occ:1.00 NE2 A:HIS76 2.1 20.2 1.0 NE2 A:HIS141 2.1 18.6 1.0 OE1 A:GLU207 2.1 20.8 1.0 OD2 A:ASP282 2.2 25.5 1.0 OE2 A:GLU207 2.6 21.9 1.0 CD A:GLU207 2.7 22.0 1.0 OD1 A:ASP282 2.7 21.4 1.0 CG A:ASP282 2.7 24.6 1.0 CE1 A:HIS76 3.0 23.3 1.0 CE1 A:HIS141 3.0 21.3 1.0 CD2 A:HIS76 3.1 22.5 1.0 CD2 A:HIS141 3.1 20.7 1.0 ND2 A:ASN228 3.9 25.9 1.0 ND1 A:HIS76 4.1 18.8 1.0 CG A:GLU207 4.2 24.1 1.0 ND1 A:HIS141 4.2 18.8 1.0 CG A:HIS76 4.2 22.4 1.0 CG A:ASN228 4.2 24.2 1.0 CB A:ASP282 4.2 22.1 1.0 CG A:HIS141 4.3 20.5 1.0 CB A:ALA209 4.3 19.7 1.0 O A:HOH608 4.3 27.1 1.0 O A:HOH535 4.4 25.0 1.0 OD1 A:ASN228 4.6 23.1 1.0 CB A:ASN228 4.7 21.4 1.0 CD1 A:LEU101 5.0 20.7 1.0 CB A:GLU207 5.0 25.0 1.0

Zinc binding site 2 out of 2 in the Yfea with Metal Bound to Site 2 - Zn Wavelength


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Yfea with Metal Bound to Site 2 - Zn Wavelength within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:48.0 occ:1.00 NE2 A:HIS163 2.0 30.4 1.0 O A:HOH688 2.1 47.3 1.0 O A:HOH675 2.3 28.3 1.0 O A:HOH706 2.8 42.7 1.0 CE1 A:HIS163 2.8 28.0 1.0 CD2 A:HIS163 3.1 29.5 1.0 ND1 A:HIS163 4.0 30.8 1.0 CG A:HIS163 4.2 33.3 1.0 CG A:GLU162 4.4 45.2 1.0 CB A:PRO116 4.6 27.8 1.0 O A:HOH710 4.6 36.8 1.0 CB A:GLU162 5.0 37.2 1.0

C.D.Radka, L.J.Delucas, L.S.Wilson, M.B.Lawrenz, R.D.Perry, S.G.Aller. Crystal Structure of Yersinia Pestis Virulence Factor Yfea Reveals Two Polyspecific Metal-Binding Sites. Acta Crystallogr D Struct V. 73 557 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 28695856
DOI: 10.1107/S2059798317006349