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Zinc in PDB 5uxu: Yfea From Yersinia Pestis Treated with Edta During Purification and Crystallization

Protein crystallography data

The structure of Yfea From Yersinia Pestis Treated with Edta During Purification and Crystallization, PDB code: 5uxu was solved by C.D.Radka, L.J.Delucas, S.G.Aller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.85 / 1.84
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.319, 66.875, 81.693, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 20.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Yfea From Yersinia Pestis Treated with Edta During Purification and Crystallization (pdb code 5uxu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Yfea From Yersinia Pestis Treated with Edta During Purification and Crystallization, PDB code: 5uxu:

Zinc binding site 1 out of 1 in 5uxu

Go back to Zinc Binding Sites List in 5uxu
Zinc binding site 1 out of 1 in the Yfea From Yersinia Pestis Treated with Edta During Purification and Crystallization


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Yfea From Yersinia Pestis Treated with Edta During Purification and Crystallization within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:19.6
occ:1.00
OE1 A:GLU207 2.1 14.5 1.0
NE2 A:HIS141 2.1 11.6 1.0
NE2 A:HIS76 2.1 13.7 1.0
OD2 A:ASP282 2.2 12.8 1.0
OD1 A:ASP282 2.5 16.6 1.0
OE2 A:GLU207 2.6 14.5 1.0
CD A:GLU207 2.7 14.6 1.0
CG A:ASP282 2.7 14.3 1.0
CE1 A:HIS141 3.0 14.4 1.0
CE1 A:HIS76 3.1 14.3 1.0
CD2 A:HIS76 3.1 13.3 1.0
CD2 A:HIS141 3.1 13.0 1.0
ND2 A:ASN228 3.7 12.3 1.0
CG A:GLU207 4.2 12.7 1.0
CG A:ASN228 4.2 16.4 1.0
ND1 A:HIS141 4.2 12.8 1.0
ND1 A:HIS76 4.2 13.4 1.0
CB A:ASP282 4.2 10.3 1.0
CG A:HIS76 4.2 13.5 1.0
CG A:HIS141 4.3 12.1 1.0
O A:HOH659 4.3 16.0 1.0
CB A:ALA209 4.3 11.1 1.0
OD1 A:ASN228 4.6 13.1 1.0
O A:HOH529 4.6 12.8 1.0
CB A:ASN228 4.7 14.3 1.0
CD1 A:LEU101 4.9 13.1 1.0
CB A:GLU207 4.9 13.5 1.0

Reference:

C.D.Radka, L.J.Delucas, L.S.Wilson, M.B.Lawrenz, R.D.Perry, S.G.Aller. Crystal Structure of Yersinia Pestis Virulence Factor Yfea Reveals Two Polyspecific Metal-Binding Sites. Acta Crystallogr D Struct V. 73 557 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 28695856
DOI: 10.1107/S2059798317006349
Page generated: Wed Dec 16 11:07:31 2020

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