Atomistry » Zinc » PDB 5uqa-5v2w » 5uuc
Atomistry »
  Zinc »
    PDB 5uqa-5v2w »
      5uuc »

Zinc in PDB 5uuc: Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant

Enzymatic activity of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant

All present enzymatic activity of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant:
3.4.24.27;

Protein crystallography data

The structure of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant, PDB code: 5uuc was solved by D.H.Juers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.89 / 1.60
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 96.546, 96.546, 105.280, 90.00, 90.00, 90.00
R / Rfree (%) 14.1 / 16.6

Other elements in 5uuc:

The structure of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant also contains other interesting chemical elements:

Calcium (Ca) 3 atoms
Chlorine (Cl) 5 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant (pdb code 5uuc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant, PDB code: 5uuc:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 10 in 5uuc

Go back to Zinc Binding Sites List in 5uuc
Zinc binding site 1 out of 10 in the Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:15.1
occ:0.97
 OD2 A:ASP185 2.0 13.3 1.0
OE2 A:GLU190 2.1 12.9 1.0
OE2 A:GLU177 2.1 12.5 1.0
O A:HOH550 2.1 13.5 1.0
O A:ASN183 2.3 15.5 1.0
CG A:ASP185 3.0 15.0 1.0
CD A:GLU177 3.0 12.1 1.0
CD A:GLU190 3.1 11.0 1.0
OD1 A:ASP185 3.4 13.2 1.0
C A:ASN183 3.4 16.6 1.0
HG3 A:GLU190 3.4 15.3 1.0
HA A:PRO184 3.5 20.3 1.0
HB2 A:ASN183 3.5 23.7 1.0
CA A:CA401 3.6 12.4 1.0
OE1 A:GLU177 3.6 12.8 1.0
HG2 A:GLU190 3.6 15.3 1.0
CG A:GLU190 3.6 12.7 1.0
O A:LYS182 3.9 21.9 1.0
HG2 A:GLU177 4.0 15.8 1.0
CG A:GLU177 4.0 13.1 1.0
CA A:PRO184 4.0 16.9 1.0
OD1 A:ASP191 4.1 15.7 1.0
OD2 A:ASP191 4.1 16.7 1.0
H A:ASP185 4.1 15.9 1.0
OE1 A:GLU190 4.1 12.3 1.0
C A:PRO184 4.1 16.9 1.0
N A:ASP185 4.1 13.2 1.0
HG3 A:GLU177 4.1 15.8 1.0
HB3 A:ASN183 4.1 23.7 1.0
CB A:ASN183 4.2 19.8 1.0
N A:PRO184 4.2 16.9 1.0
CB A:ASP185 4.2 12.5 1.0
HB3 A:ASP185 4.3 15.0 1.0
O A:HOH666 4.3 52.4 1.0
CG A:ASP191 4.4 14.8 1.0
CA A:ASN183 4.4 15.2 1.0
O A:PRO184 4.7 18.2 1.0
CA A:ASP185 4.8 11.6 1.0
O A:HOH575 4.9 15.8 1.0
HB2 A:ASP185 4.9 15.0 1.0
C A:LYS182 4.9 22.6 1.0

Zinc binding site 2 out of 10 in 5uuc

Go back to Zinc Binding Sites List in 5uuc
Zinc binding site 2 out of 10 in the Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn405

b:13.1
occ:0.96
 O A:HOH715 1.8 15.2 1.0
OE2 A:GLU166 2.0 14.9 0.7
NE2 A:HIS146 2.0 11.4 1.0
OE1 A:GLU166 2.0 11.8 0.3
NE2 A:HIS142 2.0 10.2 1.0
CD A:GLU166 2.9 16.2 0.7
CD A:GLU166 2.9 11.6 0.3
CE1 A:HIS146 2.9 12.3 1.0
CD2 A:HIS142 3.0 10.7 1.0
CE1 A:HIS142 3.0 10.5 1.0
OE2 A:GLU166 3.0 10.8 0.3
CD2 A:HIS146 3.1 12.0 1.0
HE1 A:HIS146 3.1 14.7 1.0
OE1 A:GLU166 3.1 16.0 0.7
HD2 A:HIS142 3.2 12.9 1.0
HE1 A:HIS142 3.2 12.6 1.0
HH A:TYR157 3.2 21.9 0.5
HD2 A:HIS146 3.3 14.4 1.0
ZN A:ZN407 3.3 26.9 0.6
HA A:MRD420 3.3 34.6 1.0
ZN A:ZN406 3.3 23.7 0.4
OE2 A:GLU143 3.6 22.7 1.0
ZN A:ZN407 3.7 27.6 0.5
HA A:GLU166 3.8 12.9 0.7
HA A:GLU166 3.8 13.2 0.3
O A:HOH502 3.9 29.1 1.0
O4 A:MRD420 3.9 28.9 1.0
OH A:TYR157 3.9 18.2 0.5
ND1 A:HIS146 4.1 12.5 1.0
HB2 A:SER169 4.1 14.3 1.0
ND1 A:HIS142 4.1 10.6 1.0
O A:HOH599 4.1 30.1 1.0
CG A:HIS142 4.1 10.2 1.0
CG A:HIS146 4.2 10.9 1.0
NE2 A:HIS231 4.2 25.9 1.0
HE1 A:TYR157 4.2 19.8 0.5
CG A:GLU166 4.2 13.2 0.7
O A:HOH699 4.2 47.1 1.0
HB3 A:SER169 4.3 14.3 1.0
CG A:GLU166 4.3 11.7 0.3
HG2 A:GLU166 4.3 15.8 0.7
CD A:GLU143 4.5 13.8 1.0
CB A:SER169 4.6 11.9 1.0
HB3 A:GLU166 4.6 14.3 0.3
HD2 A:HIS231 4.6 30.2 1.0
O A:HOH580 4.6 40.6 1.0
HH22 A:ARG203 4.7 17.2 1.0
CA A:GLU166 4.7 11.0 0.3
HG3 A:GLU166 4.7 14.1 0.3
CA A:GLU166 4.7 10.8 0.7
OG A:SER169 4.8 12.2 1.0
CB A:GLU166 4.8 12.0 0.3
CD2 A:HIS231 4.8 25.2 1.0
OE1 A:GLU143 4.8 21.4 1.0
CZ A:TYR157 4.8 15.2 0.5
HG3 A:GLU166 4.8 15.8 0.7
CE1 A:TYR157 4.8 16.5 0.5
HD1 A:HIS146 4.8 15.1 1.0
HG2 A:GLU166 4.9 14.1 0.3
HD1 A:HIS142 4.9 12.7 1.0
HA A:GLU143 4.9 13.7 1.0

Zinc binding site 3 out of 10 in 5uuc

Go back to Zinc Binding Sites List in 5uuc
Zinc binding site 3 out of 10 in the Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn406

b:23.7
occ:0.36
 O A:HOH580 1.7 40.6 1.0
O A:HOH715 2.0 15.2 1.0
NE2 A:HIS231 2.0 25.9 1.0
O A:HOH699 2.3 47.1 1.0
O A:HOH502 2.7 29.1 1.0
CE1 A:HIS231 2.7 21.4 1.0
HE1 A:HIS231 2.8 25.7 1.0
ZN A:ZN407 3.0 26.9 0.6
ZN A:ZN407 3.1 27.6 0.5
CD2 A:HIS231 3.1 25.2 1.0
ZN A:ZN405 3.3 13.1 1.0
HH A:TYR157 3.4 21.9 0.5
HD2 A:HIS231 3.4 30.2 1.0
OH A:TYR157 3.5 18.2 0.5
OE2 A:GLU166 3.5 14.9 0.7
O4 A:MRD420 3.6 28.9 1.0
HA A:MRD420 3.6 34.6 1.0
O A:HOH836 3.7 51.8 1.0
OE1 A:GLU166 3.7 11.8 0.3
H2 A:MRD420 3.7 42.5 1.0
O2 A:MRD420 3.8 35.4 1.0
O A:HOH549 3.9 17.9 0.9
ND1 A:HIS231 3.9 24.0 1.0
CD A:GLU166 3.9 16.2 0.7
OE1 A:GLU166 3.9 16.0 0.7
CG A:HIS231 4.1 20.8 1.0
O A:HOH756 4.1 34.0 1.0
CD A:GLU166 4.1 11.6 0.3
OE2 A:GLU166 4.2 10.8 0.3
OE2 A:GLU143 4.5 22.7 1.0
NE2 A:HIS142 4.5 10.2 1.0
O A:HOH599 4.6 30.1 1.0
HH22 A:ARG203 4.6 17.2 1.0
CZ A:TYR157 4.8 15.2 0.5
C4 A:MRD420 4.9 23.9 1.0
NE2 A:HIS146 5.0 11.4 1.0
HH12 A:ARG203 5.0 21.5 1.0

Zinc binding site 4 out of 10 in 5uuc

Go back to Zinc Binding Sites List in 5uuc
Zinc binding site 4 out of 10 in the Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn407

b:26.9
occ:0.55
 ZN A:ZN407 0.0 26.9 0.6
O A:HOH715 1.9 15.2 1.0
O A:HOH599 2.0 30.1 1.0
ZN A:ZN407 2.0 27.6 0.5
O A:HOH549 2.1 17.9 0.9
OE2 A:GLU143 2.2 22.7 1.0
O A:HOH699 2.8 47.1 1.0
CD A:GLU143 3.0 13.8 1.0
ZN A:ZN406 3.0 23.7 0.4
O A:HOH580 3.0 40.6 1.0
OE1 A:GLU143 3.1 21.4 1.0
ZN A:ZN405 3.3 13.1 1.0
HA A:MRD420 3.4 34.6 1.0
HD2 A:HIS146 3.6 14.4 1.0
O A:HOH833 3.8 55.2 1.0
NE2 A:HIS146 4.0 11.4 1.0
O4 A:MRD420 4.0 28.9 1.0
CD2 A:HIS146 4.1 12.0 1.0
O2 A:MRD420 4.1 35.4 1.0
HA A:PHE114 4.1 16.1 1.0
O A:ALA113 4.2 16.5 1.0
HD2 A:HIS142 4.2 12.9 1.0
HB3 A:PHE114 4.3 18.9 1.0
H2 A:MRD420 4.4 42.5 1.0
O A:HOH732 4.4 35.9 1.0
CG A:GLU143 4.5 12.4 1.0
NE2 A:HIS142 4.5 10.2 1.0
HH A:TYR157 4.5 21.9 0.5
OE2 A:GLU166 4.6 14.9 0.7
O A:HOH502 4.6 29.1 1.0
OH A:TYR157 4.7 18.2 0.5
HG2 A:GLU143 4.7 14.9 1.0
CD2 A:HIS142 4.7 10.7 1.0
HG3 A:GLU143 4.7 14.9 1.0
HB2 A:PHE114 4.7 18.9 1.0
H4 A:MRD420 4.8 28.7 1.0
CB A:PHE114 4.9 15.7 1.0
NE2 A:HIS231 4.9 25.9 1.0
CA A:PHE114 4.9 13.4 1.0
OE1 A:GLU166 4.9 11.8 0.3
H A:TRP115 5.0 16.3 1.0
OE2 A:GLU166 5.0 10.8 0.3
HMC3 A:MRD420 5.0 37.3 1.0
C4 A:MRD420 5.0 23.9 1.0

Zinc binding site 5 out of 10 in 5uuc

Go back to Zinc Binding Sites List in 5uuc
Zinc binding site 5 out of 10 in the Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn407

b:27.6
occ:0.45
 ZN A:ZN407 0.0 27.6 0.5
HA A:MRD420 1.8 34.6 1.0
OE2 A:GLU143 1.9 22.7 1.0
ZN A:ZN407 2.0 26.9 0.6
O4 A:MRD420 2.2 28.9 1.0
O A:HOH715 2.3 15.2 1.0
O A:HOH549 2.3 17.9 0.9
O2 A:MRD420 2.4 35.4 1.0
O A:HOH580 2.8 40.6 1.0
H4 A:MRD420 2.9 28.7 1.0
H2 A:MRD420 3.0 42.5 1.0
CD A:GLU143 3.0 13.8 1.0
C4 A:MRD420 3.0 23.9 1.0
ZN A:ZN406 3.1 23.7 0.4
HMC3 A:MRD420 3.2 37.3 1.0
C2 A:MRD420 3.4 30.5 1.0
O A:HOH502 3.4 29.1 1.0
ZN A:ZN405 3.7 13.1 1.0
HD2 A:HIS142 3.7 12.9 1.0
CM A:MRD420 3.7 31.1 1.0
C3 A:MRD420 3.7 23.7 1.0
O A:ALA113 3.8 16.5 1.0
OE1 A:GLU143 3.8 21.4 1.0
HG2 A:GLU143 3.8 14.9 1.0
O A:HOH599 3.9 30.1 1.0
CG A:GLU143 3.9 12.4 1.0
HMC2 A:MRD420 4.0 37.3 1.0
NE2 A:HIS142 4.0 10.2 1.0
CD2 A:HIS142 4.0 10.7 1.0
O A:HOH699 4.1 47.1 1.0
HG3 A:GLU143 4.1 14.9 1.0
H3C2 A:MRD420 4.1 28.4 1.0
C5 A:MRD420 4.3 18.3 1.0
H5C3 A:MRD420 4.5 21.9 1.0
H5C1 A:MRD420 4.5 21.9 1.0
HA A:PHE114 4.5 16.1 1.0
H3C1 A:MRD420 4.6 28.4 1.0
HD2 A:HIS146 4.6 14.4 1.0
HMC1 A:MRD420 4.6 37.3 1.0
C1 A:MRD420 4.7 28.6 1.0
OD1 A:ASN112 4.7 21.0 1.0
H1C2 A:MRD420 4.8 34.4 1.0
H1C1 A:MRD420 4.9 34.4 1.0
O A:HOH836 4.9 51.8 1.0
C A:ALA113 4.9 15.7 1.0
NE2 A:HIS231 4.9 25.9 1.0
NE2 A:HIS146 5.0 11.4 1.0
H A:ALA113 5.0 17.6 1.0

Zinc binding site 6 out of 10 in 5uuc

Go back to Zinc Binding Sites List in 5uuc
Zinc binding site 6 out of 10 in the Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn408

b:38.0
occ:0.56
 ND1 A:HIS231 1.8 24.0 1.0
OD1 A:ASP226 2.1 24.7 1.0
CE1 A:HIS231 2.5 21.4 1.0
HE1 A:HIS231 2.7 25.7 1.0
CG A:HIS231 2.8 20.8 1.0
CG A:ASP226 2.9 25.9 1.0
HB2 A:HIS231 2.9 23.9 1.0
OD2 A:ASP226 3.2 25.6 1.0
CB A:HIS231 3.4 19.9 1.0
O A:HOH713 3.6 42.0 1.0
NE2 A:HIS231 3.6 25.9 1.0
H A:HIS231 3.8 18.4 1.0
CD2 A:HIS231 3.8 25.2 1.0
HG23 A:VAL230 4.0 20.4 1.0
HB3 A:HIS231 4.0 23.9 1.0
HG22 A:VAL230 4.1 20.4 1.0
CB A:ASP226 4.2 23.2 1.0
HA A:ASP226 4.3 28.9 1.0
N A:HIS231 4.4 15.4 1.0
HB2 A:ASP226 4.4 27.8 1.0
CG2 A:VAL230 4.5 17.0 1.0
CA A:HIS231 4.5 17.5 1.0
HD2 A:HIS231 4.6 30.2 1.0
O A:HOH824 4.7 49.0 1.0
O A:HOH836 4.8 51.8 1.0
CA A:ASP226 4.8 24.1 1.0
HG21 A:VAL230 4.9 20.4 1.0
HB3 A:ASP226 4.9 27.8 1.0

Zinc binding site 7 out of 10 in 5uuc

Go back to Zinc Binding Sites List in 5uuc
Zinc binding site 7 out of 10 in the Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn409

b:14.7
occ:0.67
 HZ1 A:LYS239 1.3 26.6 1.0
O A:HOH714 1.8 17.7 1.0
NZ A:LYS239 2.1 22.2 1.0
CL A:CL414 2.1 43.3 0.7
CL A:CL413 2.2 21.5 0.8
HZ3 A:LYS239 2.4 26.6 1.0
HZ2 A:LYS239 2.5 26.6 1.0
CE A:LYS239 3.2 16.7 1.0
HE2 A:LYS239 3.3 20.0 1.0
HE3 A:LYS239 3.3 20.0 1.0
ZN A:ZN410 3.4 17.3 0.9
O A:HOH807 3.5 44.1 1.0
HD21 A:LEU243 3.7 17.8 1.0
CL A:CL415 3.9 20.5 0.9
HE2 A:TYR242 3.9 21.0 1.0
O A:SER206 3.9 16.8 1.0
HB2 A:HIS250 4.0 18.1 1.0
O A:THR249 4.3 22.4 1.0
ND1 A:HIS250 4.4 13.4 1.0
CD A:LYS239 4.5 15.5 1.0
HD23 A:LEU243 4.6 17.8 1.0
CD2 A:LEU243 4.6 14.8 1.0
CE2 A:TYR242 4.6 17.5 1.0
HD3 A:LYS239 4.7 18.6 1.0
HD2 A:LYS239 4.7 18.6 1.0
HA3 A:GLY248 4.7 19.5 1.0
O A:HOH787 4.8 28.4 1.0
HD2 A:TYR242 4.8 19.1 1.0
CB A:HIS250 4.8 15.1 1.0
HA A:HIS250 4.9 17.7 1.0
O A:HOH740 4.9 37.9 1.0
CG A:HIS250 4.9 14.1 1.0

Zinc binding site 8 out of 10 in 5uuc

Go back to Zinc Binding Sites List in 5uuc
Zinc binding site 8 out of 10 in the Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn410

b:17.3
occ:0.91
 O A:HOH714 2.0 17.7 1.0
ND1 A:HIS250 2.1 13.4 1.0
CL A:CL416 2.2 14.9 0.9
CL A:CL415 2.2 20.5 0.9
CE1 A:HIS250 2.9 16.2 1.0
HA A:HIS250 2.9 17.7 1.0
HE1 A:HIS250 3.0 19.4 1.0
CG A:HIS250 3.2 14.1 1.0
HE2 A:LYS239 3.3 20.0 1.0
ZN A:ZN409 3.4 14.7 0.7
HB2 A:HIS250 3.5 18.1 1.0
HZ1 A:LYS239 3.5 26.6 1.0
CB A:HIS250 3.6 15.1 1.0
CA A:HIS250 3.7 14.8 1.0
H A:TYR251 3.8 18.4 1.0
O A:THR249 3.9 22.4 1.0
HZ3 A:LYS239 4.0 26.6 1.0
NZ A:LYS239 4.0 22.2 1.0
CE A:LYS239 4.0 16.7 1.0
NE2 A:HIS250 4.1 15.7 1.0
CD2 A:HIS250 4.2 13.4 1.0
HE3 A:LYS239 4.4 20.0 1.0
N A:TYR251 4.4 15.4 1.0
CL A:CL414 4.4 43.3 0.7
C A:HIS250 4.6 13.5 1.0
HB3 A:HIS250 4.6 18.1 1.0
N A:HIS250 4.7 15.7 1.0
OD2 A:ASP215 4.7 15.4 1.0
C A:THR249 4.8 18.4 1.0
HE2 A:HIS250 4.8 18.8 1.0
HD2 A:TYR251 4.9 17.2 1.0
HZ2 A:LYS239 4.9 26.6 1.0

Zinc binding site 9 out of 10 in 5uuc

Go back to Zinc Binding Sites List in 5uuc
Zinc binding site 9 out of 10 in the Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn411

b:37.6
occ:0.46
 O A:HOH530 1.9 20.3 0.8
O A:HOH841 2.3 33.5 0.7
ZN A:ZN412 2.3 18.0 0.3
HB3 A:TYR211 3.7 19.6 1.0
O A:HOH642 3.7 31.4 0.9
O A:LEU202 3.8 16.5 1.0
O A:HOH667 4.2 23.6 1.0
OD2 A:ASP213 4.3 26.2 1.0
O A:TYR211 4.4 21.0 1.0
OD1 A:ASP213 4.4 22.4 1.0
HB2 A:TYR211 4.4 19.6 1.0
CB A:TYR211 4.5 16.3 1.0
O A:HOH639 4.5 27.8 1.0
CG A:ASP213 4.7 22.1 1.0
HB3 A:ARG203 4.8 22.2 1.0
C A:LEU202 5.0 14.8 1.0

Zinc binding site 10 out of 10 in 5uuc

Go back to Zinc Binding Sites List in 5uuc
Zinc binding site 10 out of 10 in the Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Tetragonal Thermolysin Cryocooled to 100 K with 50% Mpd As Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn412

b:18.0
occ:0.27
 O A:HOH530 1.9 20.3 0.8
O A:HOH642 2.1 31.4 0.9
OD2 A:ASP213 2.2 26.2 1.0
OD1 A:ASP213 2.2 22.4 1.0
ZN A:ZN411 2.3 37.6 0.5
CG A:ASP213 2.5 22.1 1.0
HB3 A:ARG203 3.8 22.2 1.0
O A:HOH667 3.9 23.6 1.0
CB A:ASP213 4.0 15.4 1.0
HB2 A:TYR211 4.1 19.6 1.0
HB3 A:TYR211 4.1 19.6 1.0
O A:HOH841 4.2 33.5 0.7
O A:LEU202 4.2 16.5 1.0
HA A:ILE232 4.3 22.4 1.0
O A:TYR211 4.3 21.0 1.0
HG12 A:ILE232 4.4 31.2 1.0
HB2 A:ASP213 4.4 18.5 1.0
O A:HOH582 4.5 15.4 1.0
HB3 A:ASP213 4.5 18.5 1.0
O A:HIS231 4.6 22.6 1.0
H A:ASP213 4.6 19.3 1.0
CB A:TYR211 4.6 16.3 1.0
HA A:ASP213 4.7 18.7 1.0
CB A:ARG203 4.7 18.5 1.0
HD3 A:ARG203 4.8 19.8 1.0
CA A:ASP213 4.8 15.6 1.0
N A:ASP213 4.8 16.1 1.0
HA A:ARG203 4.9 19.0 1.0
O A:HOH803 4.9 21.4 1.0
HB2 A:ARG203 4.9 22.2 1.0

Reference:

D.H.Juers, C.A.Farley, C.P.Saxby, R.A.Cotter, J.K.B.Cahn, R.C.Holton-Burke, K.Harrison, Z.Wu. The Impact of Cryosolution Thermal Contraction on Proteins and Protein Crystals: Volumes, Conformation and Order. Acta Crystallogr D Struct V. 74 922 2018BIOL.
ISSN: ISSN 2059-7983
PubMed: 30198901
DOI: 10.1107/S2059798318008793
Page generated: Mon Oct 28 12:20:01 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy