Zinc in PDB 5ugk: Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Zinc atom in the Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy (pdb code 5ugk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy, PDB code: 5ugk:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 12 in the Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:0.0 occ:1.00 ND1 A:HIS4 1.9 0.0 1.0 ND1 C:HIS4 2.1 0.0 1.0 NE2 A:HIS2 2.2 0.0 1.0 HB2 A:HIS4 2.7 0.0 1.0 CG A:HIS4 2.9 0.0 1.0 HB2 C:HIS4 2.9 0.0 1.0 CE1 A:HIS4 3.0 0.0 1.0 CE1 A:HIS2 3.0 0.0 1.0 HE1 A:HIS2 3.1 0.0 1.0 CE1 C:HIS4 3.1 0.0 1.0 CG C:HIS4 3.2 0.0 1.0 HE1 A:HIS4 3.2 0.0 1.0 HE1 C:HIS4 3.3 0.0 1.0 CB A:HIS4 3.3 0.0 1.0 CD2 A:HIS2 3.4 0.0 1.0 CB C:HIS4 3.5 0.0 1.0 HD2 A:HIS2 3.8 0.0 1.0 HA A:HIS4 3.9 0.0 1.0 HB3 C:HIS4 3.9 0.0 1.0 CD2 A:HIS4 4.0 0.0 1.0 NE2 A:HIS4 4.1 0.0 1.0 HB3 A:HIS4 4.1 0.0 1.0 CA A:HIS4 4.2 0.0 1.0 ND1 A:HIS2 4.3 0.0 1.0 NE2 C:HIS4 4.3 0.0 1.0 CD2 C:HIS4 4.3 0.0 1.0 CG A:HIS2 4.4 0.0 1.0 H C:HIS4 4.7 0.0 1.0 O A:VAL3 4.7 0.0 1.0 N A:HIS4 4.8 0.0 1.0 CA C:HIS4 4.9 0.0 1.0 C A:VAL3 5.0 0.0 1.0 HE2 A:HIS4 5.0 0.0 1.0

Zinc binding site 2 out of 12 in the Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn101 b:0.0 occ:1.00 ND1 C:HIS2 1.9 0.0 1.0 ND1 E:HIS2 1.9 0.0 1.0 NE2 C:HIS4 2.2 0.0 1.0 HB3 C:HIS2 2.8 0.0 1.0 CE1 E:HIS2 2.8 0.0 1.0 CE1 C:HIS2 2.9 0.0 1.0 HE1 E:HIS2 2.9 0.0 1.0 CG C:HIS2 3.0 0.0 1.0 CG E:HIS2 3.0 0.0 1.0 HB3 E:HIS2 3.1 0.0 1.0 HE1 C:HIS2 3.1 0.0 1.0 CE1 C:HIS4 3.2 0.0 1.0 CD2 C:HIS4 3.3 0.0 1.0 HE1 C:HIS4 3.3 0.0 1.0 CB C:HIS2 3.4 0.0 1.0 HD2 C:HIS4 3.5 0.0 1.0 CB E:HIS2 3.6 0.0 1.0 NE2 E:HIS2 4.0 0.0 1.0 HB2 E:HIS2 4.0 0.0 1.0 NE2 C:HIS2 4.0 0.0 1.0 CD2 C:HIS2 4.1 0.0 1.0 CD2 E:HIS2 4.1 0.0 1.0 HA C:HIS2 4.1 0.0 1.0 HB2 C:HIS2 4.2 0.0 1.0 CA C:HIS2 4.3 0.0 1.0 ND1 C:HIS4 4.3 0.0 1.0 CG C:HIS4 4.4 0.0 1.0 O E:HIS2 4.6 0.0 1.0 H C:VAL3 4.8 0.0 1.0 CA E:HIS2 4.9 0.0 1.0 C C:HIS2 4.9 0.0 1.0 HE2 C:HIS2 4.9 0.0 1.0

Zinc binding site 3 out of 12 in the Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn101 b:0.0 occ:1.00 ND1 E:HIS4 1.9 0.0 1.0 ND1 G:HIS4 2.2 0.0 1.0 NE2 E:HIS2 2.2 0.0 1.0 HB2 E:HIS4 2.7 0.0 1.0 CG E:HIS4 2.9 0.0 1.0 CE1 E:HIS4 3.0 0.0 1.0 CE1 E:HIS2 3.0 0.0 1.0 HE1 E:HIS2 3.1 0.0 1.0 HB2 G:HIS4 3.1 0.0 1.0 CE1 G:HIS4 3.1 0.0 1.0 HE1 E:HIS4 3.3 0.0 1.0 HE1 G:HIS4 3.3 0.0 1.0 CG G:HIS4 3.3 0.0 1.0 CB E:HIS4 3.3 0.0 1.0 CD2 E:HIS2 3.4 0.0 1.0 CB G:HIS4 3.7 0.0 1.0 HD2 E:HIS2 3.8 0.0 1.0 HA E:HIS4 3.8 0.0 1.0 CD2 E:HIS4 4.1 0.0 1.0 HB3 G:HIS4 4.1 0.0 1.0 NE2 E:HIS4 4.1 0.0 1.0 HB3 E:HIS4 4.1 0.0 1.0 CA E:HIS4 4.2 0.0 1.0 ND1 E:HIS2 4.3 0.0 1.0 NE2 G:HIS4 4.3 0.0 1.0 CD2 G:HIS4 4.4 0.0 1.0 CG E:HIS2 4.5 0.0 1.0 O E:VAL3 4.6 0.0 1.0 N E:HIS4 4.7 0.0 1.0 H G:HIS4 4.9 0.0 1.0 HD2 C:HIS4 4.9 0.0 1.0 C E:VAL3 4.9 0.0 1.0

Zinc binding site 4 out of 12 in the Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn101 b:0.0 occ:1.00 ND1 G:HIS2 1.9 0.0 1.0 ND1 I:HIS2 1.9 0.0 1.0 NE2 G:HIS4 2.2 0.0 1.0 HB3 G:HIS2 2.8 0.0 1.0 CE1 I:HIS2 2.8 0.0 1.0 CE1 G:HIS2 2.9 0.0 1.0 HE1 I:HIS2 2.9 0.0 1.0 CG G:HIS2 3.0 0.0 1.0 CG I:HIS2 3.0 0.0 1.0 HB3 I:HIS2 3.1 0.0 1.0 HE1 G:HIS2 3.1 0.0 1.0 CE1 G:HIS4 3.2 0.0 1.0 CD2 G:HIS4 3.2 0.0 1.0 HE1 G:HIS4 3.3 0.0 1.0 CB G:HIS2 3.4 0.0 1.0 HD2 G:HIS4 3.5 0.0 1.0 CB I:HIS2 3.6 0.0 1.0 HB2 I:HIS2 4.0 0.0 1.0 NE2 I:HIS2 4.0 0.0 1.0 NE2 G:HIS2 4.0 0.0 1.0 CD2 G:HIS2 4.1 0.0 1.0 CD2 I:HIS2 4.1 0.0 1.0 HA G:HIS2 4.1 0.0 1.0 HB2 G:HIS2 4.2 0.0 1.0 CA G:HIS2 4.3 0.0 1.0 ND1 G:HIS4 4.3 0.0 1.0 CG G:HIS4 4.4 0.0 1.0 O I:HIS2 4.7 0.0 1.0 H G:VAL3 4.7 0.0 1.0 C G:HIS2 4.9 0.0 1.0 CA I:HIS2 4.9 0.0 1.0 HE2 G:HIS2 4.9 0.0 1.0

Zinc binding site 5 out of 12 in the Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy within 5.0Å range: probe atom residue distance (Å) B Occ I:Zn101 b:0.0 occ:1.00 ND1 I:HIS4 1.9 0.0 1.0 ND1 K:HIS4 2.2 0.0 1.0 NE2 I:HIS2 2.2 0.0 1.0 HB2 I:HIS4 2.7 0.0 1.0 CG I:HIS4 2.9 0.0 1.0 CE1 I:HIS4 3.0 0.0 1.0 CE1 I:HIS2 3.0 0.0 1.0 CE1 K:HIS4 3.0 0.0 1.0 HE1 I:HIS2 3.1 0.0 1.0 HE1 K:HIS4 3.2 0.0 1.0 HB2 K:HIS4 3.2 0.0 1.0 HE1 I:HIS4 3.2 0.0 1.0 CB I:HIS4 3.3 0.0 1.0 CG K:HIS4 3.3 0.0 1.0 CD2 I:HIS2 3.4 0.0 1.0 CB K:HIS4 3.7 0.0 1.0 HD2 I:HIS2 3.8 0.0 1.0 HA I:HIS4 3.8 0.0 1.0 CD2 I:HIS4 4.0 0.0 1.0 NE2 I:HIS4 4.1 0.0 1.0 HB3 K:HIS4 4.1 0.0 1.0 HB3 I:HIS4 4.1 0.0 1.0 CA I:HIS4 4.1 0.0 1.0 ND1 I:HIS2 4.2 0.0 1.0 NE2 K:HIS4 4.3 0.0 1.0 CD2 K:HIS4 4.3 0.0 1.0 CG I:HIS2 4.5 0.0 1.0 O I:VAL3 4.6 0.0 1.0 N I:HIS4 4.7 0.0 1.0 HD2 G:HIS4 4.8 0.0 1.0 C I:VAL3 4.9 0.0 1.0 HE2 I:HIS4 5.0 0.0 1.0 H K:HIS4 5.0 0.0 1.0

Zinc binding site 6 out of 12 in the Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn101 b:0.0 occ:1.00 NE2 K:HIS4 2.0 0.0 1.0 ND1 K:HIS2 2.1 0.0 1.0 HB3 K:HIS2 2.8 0.0 1.0 CE1 K:HIS4 3.0 0.0 1.0 CE1 K:HIS2 3.0 0.0 1.0 CD2 K:HIS4 3.1 0.0 1.0 CG K:HIS2 3.1 0.0 1.0 HE1 K:HIS2 3.2 0.0 1.0 HE1 K:HIS4 3.3 0.0 1.0 HD2 K:HIS4 3.3 0.0 1.0 CB K:HIS2 3.5 0.0 1.0 HA K:HIS2 4.2 0.0 1.0 ND1 K:HIS4 4.2 0.0 1.0 NE2 K:HIS2 4.2 0.0 1.0 CD2 K:HIS2 4.2 0.0 1.0 CG K:HIS4 4.2 0.0 1.0 HB2 K:HIS2 4.3 0.0 1.0 CA K:HIS2 4.4 0.0 1.0 H K:VAL3 4.7 0.0 1.0 C K:HIS2 4.9 0.0 1.0 N K:VAL3 5.0 0.0 1.0

Zinc binding site 7 out of 12 in the Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy within 5.0Å range: probe atom residue distance (Å) B Occ O:Zn101 b:0.0 occ:1.00 ND1 O:HIS4 1.9 0.0 1.0 ND1 Q:HIS4 2.1 0.0 1.0 NE2 O:HIS2 2.2 0.0 1.0 HB2 O:HIS4 2.7 0.0 1.0 HB2 Q:HIS4 2.9 0.0 1.0 CG O:HIS4 2.9 0.0 1.0 CE1 O:HIS4 3.0 0.0 1.0 CE1 O:HIS2 3.0 0.0 1.0 CE1 Q:HIS4 3.1 0.0 1.0 HE1 O:HIS2 3.1 0.0 1.0 CG Q:HIS4 3.1 0.0 1.0 HE1 O:HIS4 3.2 0.0 1.0 HE1 Q:HIS4 3.3 0.0 1.0 CB O:HIS4 3.3 0.0 1.0 CD2 O:HIS2 3.4 0.0 1.0 CB Q:HIS4 3.5 0.0 1.0 HD2 O:HIS2 3.7 0.0 1.0 HA O:HIS4 3.9 0.0 1.0 HB3 Q:HIS4 3.9 0.0 1.0 CD2 O:HIS4 4.0 0.0 1.0 NE2 O:HIS4 4.1 0.0 1.0 HB3 O:HIS4 4.1 0.0 1.0 CA O:HIS4 4.2 0.0 1.0 NE2 Q:HIS4 4.3 0.0 1.0 ND1 O:HIS2 4.3 0.0 1.0 CD2 Q:HIS4 4.3 0.0 1.0 CG O:HIS2 4.4 0.0 1.0 H Q:HIS4 4.6 0.0 1.0 O O:VAL3 4.7 0.0 1.0 N O:HIS4 4.7 0.0 1.0 CA Q:HIS4 4.8 0.0 1.0 C O:VAL3 4.9 0.0 1.0 N Q:HIS4 4.9 0.0 1.0 HE2 O:HIS4 5.0 0.0 1.0

Zinc binding site 8 out of 12 in the Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy within 5.0Å range: probe atom residue distance (Å) B Occ Q:Zn101 b:0.0 occ:1.00 ND1 Q:HIS2 1.9 0.0 1.0 ND1 S:HIS2 1.9 0.0 1.0 NE2 Q:HIS4 2.2 0.0 1.0 HB3 Q:HIS2 2.8 0.0 1.0 CE1 S:HIS2 2.8 0.0 1.0 CE1 Q:HIS2 2.9 0.0 1.0 CG Q:HIS2 3.0 0.0 1.0 HE1 S:HIS2 3.0 0.0 1.0 HB3 S:HIS2 3.1 0.0 1.0 CG S:HIS2 3.1 0.0 1.0 HE1 Q:HIS2 3.1 0.0 1.0 CE1 Q:HIS4 3.2 0.0 1.0 CD2 Q:HIS4 3.3 0.0 1.0 HE1 Q:HIS4 3.3 0.0 1.0 CB Q:HIS2 3.4 0.0 1.0 HD2 Q:HIS4 3.5 0.0 1.0 CB S:HIS2 3.6 0.0 1.0 NE2 S:HIS2 4.0 0.0 1.0 HB2 S:HIS2 4.0 0.0 1.0 NE2 Q:HIS2 4.0 0.0 1.0 CD2 Q:HIS2 4.1 0.0 1.0 CD2 S:HIS2 4.1 0.0 1.0 HA Q:HIS2 4.2 0.0 1.0 HB2 Q:HIS2 4.2 0.0 1.0 ND1 Q:HIS4 4.3 0.0 1.0 CA Q:HIS2 4.4 0.0 1.0 CG Q:HIS4 4.4 0.0 1.0 O S:HIS2 4.6 0.0 1.0 H Q:VAL3 4.8 0.0 1.0 CA S:HIS2 4.9 0.0 1.0 HE2 Q:HIS2 4.9 0.0 1.0 C Q:HIS2 4.9 0.0 1.0 C S:HIS2 5.0 0.0 1.0

Zinc binding site 9 out of 12 in the Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy within 5.0Å range: probe atom residue distance (Å) B Occ S:Zn101 b:0.0 occ:1.00 ND1 S:HIS4 1.9 0.0 1.0 ND1 U:HIS4 2.2 0.0 1.0 NE2 S:HIS2 2.2 0.0 1.0 HB2 S:HIS4 2.7 0.0 1.0 CG S:HIS4 3.0 0.0 1.0 CE1 S:HIS4 3.0 0.0 1.0 CE1 S:HIS2 3.0 0.0 1.0 HE1 S:HIS2 3.1 0.0 1.0 CE1 U:HIS4 3.1 0.0 1.0 HB2 U:HIS4 3.2 0.0 1.0 HE1 U:HIS4 3.2 0.0 1.0 HE1 S:HIS4 3.2 0.0 1.0 CG U:HIS4 3.3 0.0 1.0 CB S:HIS4 3.3 0.0 1.0 CD2 S:HIS2 3.4 0.0 1.0 CB U:HIS4 3.7 0.0 1.0 HD2 S:HIS2 3.8 0.0 1.0 HA S:HIS4 3.9 0.0 1.0 CD2 S:HIS4 4.1 0.0 1.0 NE2 S:HIS4 4.1 0.0 1.0 HB3 U:HIS4 4.2 0.0 1.0 HB3 S:HIS4 4.2 0.0 1.0 CA S:HIS4 4.2 0.0 1.0 ND1 S:HIS2 4.3 0.0 1.0 NE2 U:HIS4 4.3 0.0 1.0 CD2 U:HIS4 4.4 0.0 1.0 CG S:HIS2 4.5 0.0 1.0 O S:VAL3 4.7 0.0 1.0 N S:HIS4 4.8 0.0 1.0 H U:HIS4 4.9 0.0 1.0 C S:VAL3 4.9 0.0 1.0 HD2 Q:HIS4 5.0 0.0 1.0

Zinc binding site 10 out of 12 in the Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr) Spectroscopy within 5.0Å range: probe atom residue distance (Å) B Occ U:Zn101 b:0.0 occ:1.00 ND1 U:HIS2 1.9 0.0 1.0 ND1 W:HIS2 1.9 0.0 1.0 NE2 U:HIS4 2.2 0.0 1.0 HB3 U:HIS2 2.8 0.0 1.0 CE1 U:HIS2 2.9 0.0 1.0 CE1 W:HIS2 2.9 0.0 1.0 HB3 W:HIS2 3.0 0.0 1.0 CG U:HIS2 3.0 0.0 1.0 CG W:HIS2 3.0 0.0 1.0 HE1 U:HIS2 3.1 0.0 1.0 HE1 W:HIS2 3.1 0.0 1.0 CE1 U:HIS4 3.2 0.0 1.0 CD2 U:HIS4 3.3 0.0 1.0 HE1 U:HIS4 3.3 0.0 1.0 CB U:HIS2 3.4 0.0 1.0 CB W:HIS2 3.5 0.0 1.0 HD2 U:HIS4 3.5 0.0 1.0 HB2 W:HIS2 3.9 0.0 1.0 NE2 U:HIS2 4.1 0.0 1.0 NE2 W:HIS2 4.1 0.0 1.0 CD2 U:HIS2 4.1 0.0 1.0 CD2 W:HIS2 4.1 0.0 1.0 HA U:HIS2 4.2 0.0 1.0 HB2 U:HIS2 4.2 0.0 1.0 ND1 U:HIS4 4.3 0.0 1.0 CA U:HIS2 4.4 0.0 1.0 CG U:HIS4 4.4 0.0 1.0 O W:HIS2 4.7 0.0 1.0 H U:VAL3 4.8 0.0 1.0 CA W:HIS2 4.9 0.0 1.0 C U:HIS2 4.9 0.0 1.0 HE2 U:HIS2 4.9 0.0 1.0

M.Lee, T.Wang, O.V.Makhlynets, Y.Wu, N.F.Polizzi, H.Wu, P.M.Gosavi, J.Stohr, I.V.Korendovych, W.F.Degrado, M.Hong. Zinc-Binding Structure of A Catalytic Amyloid From Solid-State uc(Nmr). Proc. Natl. Acad. Sci. V. 114 6191 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28566494
DOI: 10.1073/PNAS.1706179114