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Zinc in PDB 5ucp: Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products

Enzymatic activity of Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products

All present enzymatic activity of Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products:
4.1.2.13;

Protein crystallography data

The structure of Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products, PDB code: 5ucp was solved by B.Jacques, J.Sygusch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.21 / 1.44
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 39.476, 64.633, 62.845, 82.15, 74.39, 75.78
R / Rfree (%) 16.2 / 19.6

Other elements in 5ucp:

The structure of Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products (pdb code 5ucp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products, PDB code: 5ucp:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 5ucp

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Zinc binding site 1 out of 6 in the Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:29.8
occ:0.40
HE1 A:HIS83 1.8 24.0 0.2
HE1 A:HIS83 1.9 15.1 0.3
ZN A:ZN403 2.0 20.5 0.3
O A:HOH517 2.3 29.8 1.0
ND1 A:HIS210 2.4 17.1 0.4
OE2 A:GLU134 2.4 34.4 1.0
NE2 A:HIS83 2.5 20.0 0.4
CE1 A:HIS83 2.6 20.0 0.2
CE1 A:HIS83 2.7 12.6 0.3
OE1 A:GLU134 2.8 43.9 1.0
ND1 A:HIS210 2.9 33.8 0.3
CE1 A:HIS180 2.9 51.8 1.0
CD A:GLU134 3.0 34.3 1.0
NE2 A:HIS83 3.1 22.4 0.2
HE1 A:HIS83 3.1 33.5 0.4
CE1 A:HIS83 3.2 27.9 0.4
CE1 A:HIS210 3.2 12.5 0.4
NE2 A:HIS83 3.2 25.3 0.3
HE1 A:HIS210 3.3 14.9 0.4
ND1 A:HIS210 3.3 12.6 0.2
NE2 A:HIS180 3.4 50.8 1.0
CG A:HIS210 3.4 24.3 0.4
HB3 A:HIS210 3.5 22.5 0.3
HB3 A:HIS210 3.5 22.9 0.2
HB3 A:HIS210 3.5 15.7 0.4
CG A:HIS210 3.6 12.9 0.2
CG A:HIS210 3.6 12.8 0.3
HB2 A:HIS210 3.7 22.5 0.3
ZN A:ZN404 3.7 21.5 0.2
CD2 A:HIS83 3.7 18.6 0.4
HB2 A:HIS210 3.7 22.9 0.2
CE1 A:HIS210 3.7 12.3 0.3
HB2 A:HIS210 3.8 15.7 0.4
CB A:HIS210 3.8 18.7 0.3
CB A:HIS210 3.8 19.0 0.2
CB A:HIS210 3.8 13.2 0.4
ND1 A:HIS83 3.8 21.5 0.2
CE1 A:HIS210 3.9 18.5 0.2
ND1 A:HIS83 3.9 27.2 0.3
HE1 A:HIS210 3.9 14.6 0.3
HD2 A:HIS83 4.0 22.4 0.4
HE1 A:MET102 4.0 18.1 1.0
ND1 A:HIS180 4.2 0.0 1.0
HD1 A:HIS83 4.2 25.8 0.2
HD1 A:HIS83 4.2 32.7 0.3
O A:HOH501 4.2 17.4 1.0
HE1 A:HIS210 4.3 22.2 0.2
CD2 A:HIS210 4.3 12.5 0.2
NE2 A:HIS210 4.3 15.2 0.4
ND1 A:HIS83 4.4 16.3 0.4
CD2 A:HIS83 4.4 17.9 0.2
NE2 A:HIS210 4.4 17.5 0.2
CD2 A:HIS210 4.4 17.5 0.4
CG A:GLU134 4.5 18.1 1.0
O A:HOH521 4.5 36.2 1.0
OD2 A:ASP104 4.6 20.8 1.0
CD2 A:HIS83 4.6 9.5 0.3
CD2 A:HIS210 4.6 14.1 0.3
NE2 A:HIS210 4.6 12.2 0.3
CG A:HIS83 4.7 16.8 0.4
CD2 A:HIS180 4.8 79.8 1.0
HG3 A:GLU134 4.8 21.8 1.0
CG A:HIS83 4.8 7.8 0.2
HD2 A:HIS210 4.9 14.9 0.2
CG A:HIS83 4.9 11.4 0.3
CE A:MET102 4.9 15.1 1.0
HB2 A:GLU134 4.9 18.8 1.0
HG2 A:GLU134 4.9 21.8 1.0

Zinc binding site 2 out of 6 in 5ucp

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Zinc binding site 2 out of 6 in the Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:20.5
occ:0.30
HE1 A:HIS83 1.5 33.5 0.4
NE2 A:HIS83 1.7 22.4 0.2
ZN A:ZN404 1.7 21.5 0.2
NE2 A:HIS83 1.8 25.3 0.3
CE1 A:HIS83 1.8 27.9 0.4
NE2 A:HIS180 2.0 50.8 1.0
NE2 A:HIS83 2.0 20.0 0.4
ZN A:ZN402 2.0 29.8 0.4
HE1 A:HIS83 2.1 15.1 0.3
HE1 A:HIS83 2.1 24.0 0.2
ND1 A:HIS210 2.2 33.8 0.3
CE1 A:HIS83 2.2 20.0 0.2
CE1 A:HIS83 2.2 12.6 0.3
ND1 A:HIS210 2.3 12.6 0.2
CE1 A:HIS180 2.3 51.8 1.0
ND1 A:HIS210 2.8 17.1 0.4
HB3 A:HIS210 2.9 22.5 0.3
HB3 A:HIS210 2.9 22.9 0.2
HB3 A:HIS210 2.9 15.7 0.4
CD2 A:HIS83 3.0 17.9 0.2
ND1 A:HIS83 3.1 16.3 0.4
CG A:HIS210 3.1 12.9 0.2
CE1 A:HIS210 3.1 18.5 0.2
CD2 A:HIS83 3.1 9.5 0.3
HO3 A:P6F405 3.1 30.6 0.7
CE1 A:HIS210 3.1 12.3 0.3
CG A:HIS210 3.1 12.8 0.3
CG A:HIS210 3.2 24.3 0.4
CD2 A:HIS83 3.3 18.6 0.4
CD2 A:HIS180 3.3 79.8 1.0
HE1 A:HIS210 3.3 14.6 0.3
HE1 A:HIS210 3.3 22.2 0.2
ND1 A:HIS83 3.4 21.5 0.2
CE1 A:HIS210 3.4 12.5 0.4
CB A:HIS210 3.4 18.7 0.3
ND1 A:HIS83 3.5 27.2 0.3
CB A:HIS210 3.5 19.0 0.2
HD2 A:HIS83 3.5 21.6 0.2
CB A:HIS210 3.5 13.2 0.4
ND1 A:HIS180 3.6 0.0 1.0
HD1 A:HIS83 3.6 19.6 0.4
HD2 A:HIS83 3.6 11.4 0.3
O A:HOH517 3.7 29.8 1.0
HE1 A:HIS210 3.8 14.9 0.4
CG A:HIS83 3.8 16.8 0.4
HB2 A:HIS210 3.8 22.5 0.3
CG A:HIS83 3.8 7.8 0.2
HB2 A:HIS210 3.8 22.9 0.2
CG A:HIS83 3.9 11.4 0.3
HB2 A:HIS210 3.9 15.7 0.4
HD2 A:HIS83 3.9 22.4 0.4
CD2 A:HIS210 4.0 17.5 0.4
O3 A:P6F405 4.1 25.5 0.7
CG A:HIS180 4.1 85.9 1.0
NE2 A:HIS210 4.1 15.2 0.4
O2 A:P6F405 4.1 25.4 0.7
NE2 A:HIS210 4.1 17.5 0.2
O4 A:P6F405 4.1 30.1 0.7
HD1 A:HIS83 4.1 25.8 0.2
HD1 A:HIS83 4.1 32.7 0.3
CD2 A:HIS210 4.1 12.5 0.2
OE2 A:GLU134 4.2 34.4 1.0
NE2 A:HIS210 4.2 12.2 0.3
CD2 A:HIS210 4.3 14.1 0.3
OE1 A:GLU134 4.4 43.9 1.0
HO4 A:P6F405 4.5 36.1 0.7
HE1 A:MET102 4.5 18.1 1.0
HD22 A:ASN253 4.6 19.4 1.0
HD2 A:HIS210 4.6 21.1 0.4
CD A:GLU134 4.7 34.3 1.0
HE2 A:HIS210 4.8 18.2 0.4
HA A:HIS210 4.8 17.3 0.4
CA A:HIS210 4.8 13.8 0.3
H A:GLY211 4.8 24.9 1.0
CA A:HIS210 4.8 15.7 0.2
CA A:HIS210 4.8 14.4 0.4
HA A:HIS210 4.8 18.9 0.2
HA A:HIS210 4.8 16.6 0.3
HE2 A:HIS210 4.8 21.1 0.2
C2 A:P6F405 4.9 25.9 0.7
C3 A:P6F405 4.9 26.4 0.7
C4 A:P6F405 4.9 28.1 0.7
HD2 A:HIS210 4.9 14.9 0.2
H4 A:P6F405 4.9 33.8 0.7

Zinc binding site 3 out of 6 in 5ucp

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Zinc binding site 3 out of 6 in the Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn404

b:21.5
occ:0.20
HE1 A:HIS83 1.3 33.5 0.4
HO3 A:P6F405 1.4 30.6 0.7
ZN A:ZN403 1.7 20.5 0.3
NE2 A:HIS180 2.0 50.8 1.0
NE2 A:HIS83 2.0 25.3 0.3
NE2 A:HIS83 2.0 22.4 0.2
CE1 A:HIS83 2.0 27.9 0.4
ND1 A:HIS210 2.2 12.6 0.2
O3 A:P6F405 2.4 25.5 0.7
ND1 A:HIS210 2.5 33.8 0.3
CD2 A:HIS83 2.7 17.9 0.2
HD2 A:HIS83 2.7 21.6 0.2
O2 A:P6F405 2.7 25.4 0.7
CD2 A:HIS83 2.8 9.5 0.3
CD2 A:HIS180 2.8 79.8 1.0
HD2 A:HIS83 2.8 11.4 0.3
ND1 A:HIS83 2.9 16.3 0.4
O4 A:P6F405 2.9 30.1 0.7
HD1 A:HIS83 3.0 19.6 0.4
NE2 A:HIS83 3.0 20.0 0.4
HB3 A:HIS210 3.0 22.5 0.3
CE1 A:HIS210 3.1 18.5 0.2
HB3 A:HIS210 3.1 15.7 0.4
CE1 A:HIS180 3.1 51.8 1.0
HB3 A:HIS210 3.1 22.9 0.2
CE1 A:HIS83 3.1 12.6 0.3
HE1 A:HIS210 3.1 22.2 0.2
C3 A:P6F405 3.2 26.4 0.7
CE1 A:HIS83 3.2 20.0 0.2
HO4 A:P6F405 3.2 36.1 0.7
HD22 A:ASN253 3.2 19.4 1.0
C2 A:P6F405 3.3 25.9 0.7
CG A:HIS210 3.3 12.9 0.2
CE1 A:HIS210 3.3 12.3 0.3
CG A:HIS210 3.3 12.8 0.3
C4 A:P6F405 3.4 28.1 0.7
HE1 A:HIS83 3.5 15.1 0.3
HE1 A:HIS210 3.5 14.6 0.3
CG A:HIS210 3.5 24.3 0.4
HE1 A:HIS83 3.6 24.0 0.2
H4 A:P6F405 3.6 33.8 0.7
CB A:HIS210 3.7 18.7 0.3
ZN A:ZN402 3.7 29.8 0.4
CB A:HIS210 3.7 19.0 0.2
ND1 A:HIS210 3.7 17.1 0.4
CB A:HIS210 3.8 13.2 0.4
CD2 A:HIS210 4.0 17.5 0.4
CG A:HIS83 4.0 7.8 0.2
ND2 A:ASN253 4.0 16.2 1.0
CG A:HIS180 4.0 85.9 1.0
CG A:HIS83 4.0 16.8 0.4
CG A:HIS83 4.0 11.4 0.3
OD1 A:ASP82 4.0 16.7 1.0
H A:GLY211 4.0 24.9 1.0
CD2 A:HIS83 4.1 18.6 0.4
ND1 A:HIS180 4.1 0.0 1.0
ND1 A:HIS83 4.1 27.2 0.3
ND1 A:HIS83 4.2 21.5 0.2
CE1 A:HIS210 4.2 12.5 0.4
H3 A:P6F405 4.2 31.7 0.7
NE2 A:HIS210 4.2 17.5 0.2
HD21 A:ASN253 4.2 19.4 1.0
HA A:HIS210 4.2 17.3 0.4
HA A:HIS210 4.3 18.9 0.2
HA A:HIS210 4.3 16.6 0.3
NE2 A:HIS210 4.3 15.2 0.4
NE2 A:HIS210 4.3 12.2 0.3
HD2 A:HIS210 4.3 21.1 0.4
CD2 A:HIS210 4.4 14.1 0.3
CD2 A:HIS210 4.4 12.5 0.2
HB2 A:HIS210 4.4 22.5 0.3
HB2 A:HIS210 4.4 22.9 0.2
HB2 A:HIS210 4.5 15.7 0.4
CA A:HIS210 4.6 13.8 0.3
CA A:HIS210 4.6 15.7 0.2
CA A:HIS210 4.6 14.4 0.4
HB3 A:ASN253 4.6 17.8 1.0
N A:GLY211 4.7 20.7 1.0
O A:HOH609 4.7 25.9 0.4
OD2 A:ASP82 4.7 25.1 1.0
HE1 A:HIS210 4.7 14.9 0.4
C1 A:P6F405 4.7 26.4 0.7
CG A:ASP82 4.8 19.8 1.0
HE2 A:HIS210 4.9 18.2 0.4
HB2 A:ASN253 4.9 17.8 1.0
HD2 A:HIS83 4.9 22.4 0.4
C5 A:P6F405 4.9 27.8 0.7
HD1 A:HIS83 5.0 32.7 0.3
HD1 A:HIS83 5.0 25.8 0.2
HE2 A:HIS210 5.0 21.1 0.2
CG A:ASN253 5.0 10.7 1.0

Zinc binding site 4 out of 6 in 5ucp

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Zinc binding site 4 out of 6 in the Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:25.4
occ:0.40
HE1 B:HIS83 1.7 22.6 0.2
HD1 B:HIS210 1.8 13.1 0.4
HE1 B:HIS83 1.9 19.1 0.3
HD1 B:HIS210 1.9 26.0 0.3
ZN B:ZN403 2.0 29.6 0.3
O B:HOH563 2.2 23.6 1.0
OE2 B:GLU134 2.4 43.8 1.0
ND1 B:HIS210 2.4 10.9 0.4
NE2 B:HIS83 2.4 17.0 0.4
CE1 B:HIS83 2.5 18.8 0.2
OE1 B:GLU134 2.6 31.1 1.0
ND1 B:HIS210 2.6 21.7 0.3
CE1 B:HIS83 2.7 15.9 0.3
CD B:GLU134 2.8 43.6 1.0
CE1 B:HIS210 3.1 10.8 0.4
NE2 B:HIS83 3.1 31.7 0.2
CE1 B:HIS180 3.1 75.9 1.0
HE1 B:HIS210 3.1 13.0 0.4
HE1 B:HIS83 3.2 35.1 0.4
CE1 B:HIS83 3.2 29.2 0.4
NE2 B:HIS83 3.2 28.5 0.3
HD1 B:HIS210 3.2 15.0 0.2
ND1 B:HIS210 3.3 12.4 0.2
CG B:HIS210 3.4 19.1 0.4
NE2 B:HIS180 3.4 77.8 1.0
CE1 B:HIS210 3.5 11.7 0.3
HB3 B:HIS210 3.5 19.2 0.2
CD2 B:HIS83 3.6 17.1 0.4
HB3 B:HIS210 3.6 10.3 0.3
HB3 B:HIS210 3.6 36.3 0.4
CG B:HIS210 3.6 10.3 0.3
HE1 B:HIS210 3.6 14.1 0.3
CG B:HIS210 3.6 11.2 0.2
ZN B:ZN404 3.6 23.9 0.2
ND1 B:HIS83 3.7 22.7 0.2
HB2 B:HIS210 3.7 19.2 0.2
HB2 B:HIS210 3.8 10.3 0.3
HD2 B:HIS83 3.8 20.5 0.4
ND1 B:HIS83 3.8 25.6 0.3
CB B:HIS210 3.9 16.0 0.2
CB B:HIS210 3.9 30.2 0.4
CB B:HIS210 3.9 8.7 0.3
HB2 B:HIS210 3.9 36.3 0.4
CE1 B:HIS210 3.9 30.2 0.2
HE1 B:MET102 3.9 16.5 1.0
HD1 B:HIS83 4.1 27.2 0.2
O B:HOH502 4.1 21.8 1.0
HD1 B:HIS83 4.1 30.8 0.3
NE2 B:HIS210 4.1 12.9 0.4
HE1 B:HIS210 4.3 36.3 0.2
CD2 B:HIS210 4.3 8.5 0.2
O B:HOH529 4.3 30.3 1.0
CD2 B:HIS210 4.3 10.0 0.4
ND1 B:HIS180 4.3 0.7 1.0
CG B:GLU134 4.3 17.2 1.0
ND1 B:HIS83 4.4 16.4 0.4
CD2 B:HIS83 4.4 20.4 0.2
OD2 B:ASP104 4.4 27.3 1.0
NE2 B:HIS210 4.4 26.2 0.2
CD2 B:HIS83 4.5 23.9 0.3
NE2 B:HIS210 4.6 8.2 0.3
CG B:HIS83 4.6 19.5 0.4
HG3 B:GLU134 4.6 20.7 1.0
CD2 B:HIS210 4.6 20.3 0.3
CG B:HIS83 4.7 16.6 0.2
CD2 B:HIS180 4.7 89.5 1.0
HG2 B:GLU134 4.8 20.7 1.0
HB2 B:GLU134 4.8 21.3 1.0
CE B:MET102 4.8 13.7 1.0
CG B:HIS83 4.8 10.5 0.3
HD2 B:HIS210 4.8 10.3 0.2
HE2 B:HIS210 4.8 15.5 0.4
HE3 B:MET102 4.9 16.5 1.0
CG B:ASP104 5.0 24.2 1.0

Zinc binding site 5 out of 6 in 5ucp

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Zinc binding site 5 out of 6 in the Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn403

b:29.6
occ:0.30
HD1 B:HIS210 1.4 26.0 0.3
HE1 B:HIS83 1.6 35.1 0.4
ZN B:ZN404 1.7 23.9 0.2
NE2 B:HIS83 1.8 31.7 0.2
HD1 B:HIS210 1.8 15.0 0.2
NE2 B:HIS83 1.9 28.5 0.3
CE1 B:HIS83 1.9 29.2 0.4
NE2 B:HIS180 1.9 77.8 1.0
NE2 B:HIS83 2.0 17.0 0.4
ZN B:ZN402 2.0 25.4 0.4
HE1 B:HIS83 2.0 19.1 0.3
HE1 B:HIS83 2.1 22.6 0.2
CE1 B:HIS83 2.2 15.9 0.3
CE1 B:HIS83 2.2 18.8 0.2
ND1 B:HIS210 2.2 21.7 0.3
ND1 B:HIS210 2.4 12.4 0.2
CE1 B:HIS180 2.4 75.9 1.0
HD1 B:HIS210 2.8 13.1 0.4
HB3 B:HIS210 2.8 19.2 0.2
HB3 B:HIS210 2.8 10.3 0.3
ND1 B:HIS210 2.8 10.9 0.4
HB3 B:HIS210 2.9 36.3 0.4
CD2 B:HIS83 3.1 20.4 0.2
CG B:HIS210 3.1 11.2 0.2
CG B:HIS210 3.1 19.1 0.4
ND1 B:HIS83 3.2 16.4 0.4
CG B:HIS210 3.2 10.3 0.3
CE1 B:HIS210 3.2 11.7 0.3
CD2 B:HIS180 3.2 89.5 1.0
CD2 B:HIS83 3.2 23.9 0.3
CE1 B:HIS210 3.2 30.2 0.2
CD2 B:HIS83 3.3 17.1 0.4
HE1 B:HIS210 3.4 14.1 0.3
CB B:HIS210 3.4 16.0 0.2
CB B:HIS210 3.4 8.7 0.3
ND1 B:HIS83 3.4 22.7 0.2
CE1 B:HIS210 3.4 10.8 0.4
ND1 B:HIS83 3.5 25.6 0.3
CB B:HIS210 3.5 30.2 0.4
HE1 B:HIS210 3.5 36.3 0.2
HD2 B:HIS83 3.6 24.4 0.2
O B:HOH563 3.6 23.6 1.0
ND1 B:HIS180 3.7 0.7 1.0
HD1 B:HIS83 3.7 19.7 0.4
HD2 B:HIS83 3.7 28.8 0.3
HB2 B:HIS210 3.8 19.2 0.2
HB2 B:HIS210 3.8 10.3 0.3
HE1 B:HIS210 3.8 13.0 0.4
CG B:HIS83 3.8 19.5 0.4
O1 B:G3H406 3.8 29.6 0.4
CD2 B:HIS210 3.8 10.0 0.4
O2 B:13P405 3.9 29.1 0.8
CG B:HIS83 3.9 16.6 0.2
O3 B:13P405 3.9 28.0 0.8
HB2 B:HIS210 3.9 36.3 0.4
HD2 B:HIS83 4.0 20.5 0.4
CG B:HIS83 4.0 10.5 0.3
NE2 B:HIS210 4.0 12.9 0.4
CG B:HIS180 4.0 0.3 1.0
HD1 B:HIS83 4.1 30.8 0.3
HD1 B:HIS83 4.1 27.2 0.2
CD2 B:HIS210 4.2 8.5 0.2
NE2 B:HIS210 4.2 26.2 0.2
OE1 B:GLU134 4.2 31.1 1.0
OE2 B:GLU134 4.2 43.8 1.0
H11 B:G3H406 4.3 35.2 0.3
NE2 B:HIS210 4.3 8.2 0.3
CD2 B:HIS210 4.3 20.3 0.3
HO3 B:13P405 4.4 33.6 0.8
HD2 B:HIS210 4.5 12.0 0.4
HD22 B:ASN253 4.5 18.9 1.0
HE2 B:HIS210 4.6 15.5 0.4
CD B:GLU134 4.6 43.6 1.0
H B:GLY211 4.7 22.8 1.0
HE1 B:MET102 4.7 16.5 1.0
HA B:HIS210 4.7 13.8 0.4
CA B:HIS210 4.7 11.5 0.4
CA B:HIS210 4.7 10.5 0.2
CA B:HIS210 4.7 10.5 0.3
C1 B:G3H406 4.8 28.6 0.4
HA B:HIS210 4.8 12.7 0.2
HA B:HIS210 4.8 12.7 0.3
H11 B:G3H406 4.8 34.4 0.4
C2 B:13P405 4.9 29.2 0.8
HE2 B:HIS210 5.0 31.5 0.2
HD2 B:HIS210 5.0 10.3 0.2

Zinc binding site 6 out of 6 in 5ucp

Go back to Zinc Binding Sites List in 5ucp
Zinc binding site 6 out of 6 in the Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Class II Fructose-1,6-Bisphosphate Aldolase E142A Variant of Helicobacter Pylori with Fbp and Cleavage Products within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn404

b:23.9
occ:0.20
HE1 B:HIS83 1.3 35.1 0.4
HD1 B:HIS210 1.5 15.0 0.2
ZN B:ZN403 1.7 29.6 0.3
NE2 B:HIS180 2.0 77.8 1.0
NE2 B:HIS83 2.0 28.5 0.3
NE2 B:HIS83 2.0 31.7 0.2
CE1 B:HIS83 2.1 29.2 0.4
O3 B:13P405 2.3 28.0 0.8
ND1 B:HIS210 2.3 12.4 0.2
HD1 B:HIS210 2.4 26.0 0.3
O2 B:13P405 2.5 29.1 0.8
O1 B:G3H406 2.5 29.6 0.4
CD2 B:HIS180 2.7 89.5 1.0
ND1 B:HIS210 2.8 21.7 0.3
CD2 B:HIS83 2.8 20.4 0.2
HD2 B:HIS83 2.9 24.4 0.2
CD2 B:HIS83 2.9 23.9 0.3
HO3 B:13P405 2.9 33.6 0.8
ND1 B:HIS83 2.9 16.4 0.4
H11 B:G3H406 2.9 35.2 0.3
HB3 B:HIS210 3.0 10.3 0.3
HD2 B:HIS83 3.0 28.8 0.3
HB3 B:HIS210 3.0 19.2 0.2
NE2 B:HIS83 3.0 17.0 0.4
HB3 B:HIS210 3.1 36.3 0.4
HD1 B:HIS83 3.1 19.7 0.4
CE1 B:HIS83 3.1 15.9 0.3
CE1 B:HIS180 3.1 75.9 1.0
CE1 B:HIS83 3.2 18.8 0.2
CE1 B:HIS210 3.2 30.2 0.2
HD22 B:ASN253 3.3 18.9 1.0
C2 B:13P405 3.3 29.2 0.8
CG B:HIS210 3.3 11.2 0.2
CG B:HIS210 3.4 10.3 0.3
HE1 B:HIS83 3.4 19.1 0.3
HE1 B:HIS210 3.4 36.3 0.2
C3 B:13P405 3.4 27.9 0.8
HE1 B:HIS83 3.5 22.6 0.2
CG B:HIS210 3.5 19.1 0.4
CE1 B:HIS210 3.5 11.7 0.3
C1 B:G3H406 3.6 28.6 0.4
CB B:HIS210 3.6 16.0 0.2
CB B:HIS210 3.6 8.7 0.3
ZN B:ZN402 3.6 25.4 0.4
CB B:HIS210 3.7 30.2 0.4
ND1 B:HIS210 3.8 10.9 0.4
HE1 B:HIS210 3.8 14.1 0.3
CD2 B:HIS210 3.8 10.0 0.4
C1 B:G3H406 3.8 29.3 0.3
H B:GLY211 3.9 22.8 1.0
H11 B:G3H406 3.9 34.4 0.4
CG B:HIS180 3.9 0.3 1.0
H31 B:13P405 4.0 33.5 0.8
HD1 B:HIS210 4.0 13.1 0.4
CG B:HIS83 4.0 16.6 0.2
ND2 B:ASN253 4.0 15.7 1.0
CG B:HIS83 4.0 19.5 0.4
CG B:HIS83 4.1 10.5 0.3
CD2 B:HIS83 4.1 17.1 0.4
ND1 B:HIS180 4.1 0.7 1.0
ND1 B:HIS83 4.1 25.6 0.3
O1 B:G3H406 4.1 29.4 0.3
HD2 B:HIS210 4.1 12.0 0.4
ND1 B:HIS83 4.2 22.7 0.2
HA B:HIS210 4.2 13.8 0.4
OD1 B:ASP82 4.2 17.3 1.0
H32 B:13P405 4.2 33.5 0.8
CE1 B:HIS210 4.2 10.8 0.4
HA B:HIS210 4.2 12.7 0.2
HA B:HIS210 4.2 12.7 0.3
NE2 B:HIS210 4.3 12.9 0.4
CD2 B:HIS210 4.3 20.3 0.3
HD21 B:ASN253 4.3 18.9 1.0
HB2 B:HIS210 4.3 19.2 0.2
HB2 B:HIS210 4.3 10.3 0.3
NE2 B:HIS210 4.3 8.2 0.3
NE2 B:HIS210 4.4 26.2 0.2
CD2 B:HIS210 4.4 8.5 0.2
HB2 B:HIS210 4.5 36.3 0.4
CA B:HIS210 4.5 10.5 0.2
CA B:HIS210 4.5 10.5 0.3
CA B:HIS210 4.5 11.5 0.4
N B:GLY211 4.5 19.0 1.0
HB3 B:ASN253 4.6 11.3 1.0
C1 B:13P405 4.7 29.6 0.8
HE1 B:HIS210 4.8 13.0 0.4
HE2 B:HIS210 4.8 15.5 0.4
HB2 B:ASN253 4.8 11.3 1.0
OD2 B:ASP82 4.9 25.8 1.0
C2 B:G3H406 4.9 27.0 0.4
HD2 B:HIS83 4.9 20.5 0.4
HD1 B:HIS83 4.9 30.8 0.3
CG B:ASP82 5.0 22.5 1.0
HD1 B:HIS83 5.0 27.2 0.2
O2 B:G3H406 5.0 27.3 0.4

Reference:

B.Jacques, M.Coincon, J.Sygusch. Active Site Remodeling During the Catalytic Cycle in Metal-Dependent Fructose-1,6-Bisphosphate Aldolases. J. Biol. Chem. V. 293 7737 2018.
ISSN: ESSN 1083-351X
PubMed: 29593097
DOI: 10.1074/JBC.RA117.001098
Page generated: Mon Oct 28 09:21:25 2024

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