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Zinc in PDB 5lwy: Revised Crystal Structure of the Human Adiponectin Receptor 2 in Complex with A C18 Free Fatty Acid

Protein crystallography data

The structure of Revised Crystal Structure of the Human Adiponectin Receptor 2 in Complex with A C18 Free Fatty Acid, PDB code: 5lwy was solved by C.Leyrat, I.Vasiliauskaite-Brooks, S.Granier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.52 / 2.40
Space group P 21 2 21
Cell size a, b, c (Å), α, β, γ (°) 74.580, 101.030, 108.630, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 22.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Revised Crystal Structure of the Human Adiponectin Receptor 2 in Complex with A C18 Free Fatty Acid (pdb code 5lwy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Revised Crystal Structure of the Human Adiponectin Receptor 2 in Complex with A C18 Free Fatty Acid, PDB code: 5lwy:

Zinc binding site 1 out of 1 in 5lwy

Go back to Zinc Binding Sites List in 5lwy
Zinc binding site 1 out of 1 in the Revised Crystal Structure of the Human Adiponectin Receptor 2 in Complex with A C18 Free Fatty Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Revised Crystal Structure of the Human Adiponectin Receptor 2 in Complex with A C18 Free Fatty Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:61.7
occ:1.00
NE2 A:HIS352 1.9 60.2 1.0
NE2 A:HIS348 2.3 62.5 1.0
O A:HOH503 2.5 70.7 1.0
NE2 A:HIS202 2.5 62.9 1.0
O A:HOH537 2.6 44.9 1.0
CE1 A:HIS352 2.8 60.1 1.0
CD2 A:HIS352 3.0 61.2 1.0
CD2 A:HIS348 3.2 62.7 1.0
CD2 A:HIS202 3.4 63.8 1.0
CE1 A:HIS348 3.4 62.1 1.0
CE1 A:HIS202 3.5 62.1 1.0
OG A:SER198 3.8 68.2 1.0
ND1 A:HIS352 4.0 61.3 1.0
CG A:HIS352 4.1 60.4 1.0
OD2 A:ASP219 4.1 68.1 1.0
OD1 A:ASP219 4.2 64.7 1.0
CG A:HIS348 4.4 60.9 1.0
ND1 A:HIS348 4.5 62.7 1.0
CG A:HIS202 4.5 62.0 1.0
CG A:ASP219 4.6 64.7 1.0
ND1 A:HIS202 4.6 62.9 1.0
O1 A:OLA410 4.7 72.3 1.0
CB A:SER198 4.9 61.0 1.0

Reference:

I.Vasiliauskaite-Brooks, R.Sounier, P.Rochaix, G.Bellot, M.Fortier, F.Hoh, L.De Colibus, C.Bechara, E.M.Saied, C.Arenz, C.Leyrat, S.Granier. Structural Insights Into Adiponectin Receptors Suggest Ceramidase Activity. Nature V. 6 120 2017.
ISSN: ISSN 0028-0836
PubMed: 28329765
DOI: 10.1038/NATURE21714
Page generated: Wed Dec 16 06:31:00 2020

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