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Zinc in PDB 5lwh: Ceue (Y288F Variant) A Periplasmic Protein From Campylobacter Jejuni.

Protein crystallography data

The structure of Ceue (Y288F Variant) A Periplasmic Protein From Campylobacter Jejuni., PDB code: 5lwh was solved by E.J.Wilde, E.Blagova, A.Hughes, D.J.Raines, O.V.Moroz, J.Turkenburg, A.-K.Duhme-Klair, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.81 / 1.47
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 65.521, 65.521, 145.654, 90.00, 90.00, 120.00
R / Rfree (%) 12.8 / 16.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Ceue (Y288F Variant) A Periplasmic Protein From Campylobacter Jejuni. (pdb code 5lwh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Ceue (Y288F Variant) A Periplasmic Protein From Campylobacter Jejuni., PDB code: 5lwh:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5lwh

Go back to Zinc Binding Sites List in 5lwh
Zinc binding site 1 out of 2 in the Ceue (Y288F Variant) A Periplasmic Protein From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Ceue (Y288F Variant) A Periplasmic Protein From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:19.8
occ:1.00
OE1 A:GLU220 1.9 20.4 1.0
NE2 A:HIS210 2.0 18.6 1.0
OE2 A:GLU220 2.6 19.9 1.0
CD A:GLU220 2.6 19.3 1.0
CD2 A:HIS210 3.0 18.2 1.0
CE1 A:HIS210 3.0 20.4 1.0
CG A:GLU220 4.1 20.8 1.0
ND1 A:HIS210 4.1 18.8 1.0
CG A:HIS210 4.1 18.7 1.0
ND2 A:ASN216 4.4 19.0 1.0
CA A:ASN216 4.8 18.1 1.0
CB A:GLU220 4.8 23.4 1.0
N A:ALA217 5.0 19.2 1.0

Zinc binding site 2 out of 2 in 5lwh

Go back to Zinc Binding Sites List in 5lwh
Zinc binding site 2 out of 2 in the Ceue (Y288F Variant) A Periplasmic Protein From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Ceue (Y288F Variant) A Periplasmic Protein From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:38.3
occ:0.60
OE2 A:GLU183 2.1 46.7 1.0
O A:HOH644 2.1 34.5 1.0
O A:HOH503 2.2 56.0 1.0
O A:HOH656 2.3 29.3 1.0
OE1 A:GLU183 2.3 0.8 1.0
CD A:GLU183 2.4 51.5 1.0
O A:HOH546 2.7 28.6 0.4
CG A:GLU183 4.0 40.2 1.0
O A:HOH502 4.2 42.9 1.0
CB A:GLU183 4.6 29.2 1.0

Reference:

E.J.Wilde, A.Hughes, E.V.Blagova, O.V.Moroz, R.P.Thomas, J.P.Turkenburg, D.J.Raines, A.K.Duhme-Klair, K.S.Wilson. Interactions of the Periplasmic Binding Protein Ceue with Fe(III) N-Licam(4-) Siderophore Analogues of Varied Linker Length. Sci Rep V. 7 45941 2017.
ISSN: ESSN 2045-2322
PubMed: 28383577
DOI: 10.1038/SREP45941
Page generated: Wed Dec 16 06:31:00 2020

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