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Zinc in PDB 5lw9: Crystal Structure of Human JARID1B in Complex with S40563A

Protein crystallography data

The structure of Crystal Structure of Human JARID1B in Complex with S40563A, PDB code: 5lw9 was solved by V.Srikannathasan, Y.V.Le Bihan, A.Szykowska, C.Johansson, C.Gileadi, C.H.Arrowsmith, A.M.Edwards, C.Bountra, F.Von Delft, U.Oppermann, K.Huber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.92 / 2.30
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 142.960, 142.960, 152.470, 90.00, 90.00, 120.00
R / Rfree (%) 18.5 / 21.8

Other elements in 5lw9:

The structure of Crystal Structure of Human JARID1B in Complex with S40563A also contains other interesting chemical elements:

Manganese (Mn) 2 atoms
Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human JARID1B in Complex with S40563A (pdb code 5lw9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human JARID1B in Complex with S40563A, PDB code: 5lw9:

Zinc binding site 1 out of 1 in 5lw9

Go back to Zinc Binding Sites List in 5lw9
Zinc binding site 1 out of 1 in the Crystal Structure of Human JARID1B in Complex with S40563A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human JARID1B in Complex with S40563A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:49.7
occ:1.00
ND1 A:HIS718 2.0 52.7 1.0
SG A:CYS715 2.2 51.7 1.0
SG A:CYS695 2.3 51.4 1.0
SG A:CYS692 2.3 43.6 1.0
CE1 A:HIS718 2.8 62.9 1.0
CB A:CYS692 3.1 42.3 1.0
CG A:HIS718 3.2 56.3 1.0
CB A:CYS695 3.4 47.6 1.0
CB A:CYS715 3.5 46.0 1.0
CB A:HIS718 3.7 48.0 1.0
N A:CYS695 3.7 55.2 1.0
N A:CYS715 3.9 46.5 1.0
NE2 A:HIS718 4.0 68.7 1.0
CA A:CYS695 4.2 49.9 1.0
CA A:CYS715 4.2 47.3 1.0
CD2 A:HIS718 4.2 59.9 1.0
CG2 A:THR697 4.4 49.1 1.0
CB A:LYS694 4.5 56.4 1.0
N A:HIS718 4.5 53.1 1.0
CD A:ARG619 4.6 62.5 1.0
CA A:CYS692 4.6 43.0 1.0
C A:CYS715 4.7 42.6 1.0
O A:CYS715 4.7 43.8 1.0
CA A:HIS718 4.8 46.5 1.0
CB A:HIS717 4.8 45.9 1.0
C A:LYS694 4.9 55.8 1.0
C A:CYS695 4.9 48.0 1.0
N A:LYS696 5.0 47.1 1.0
CG A:ARG619 5.0 62.2 1.0
C A:VAL714 5.0 42.9 1.0

Reference:

V.Srikannathasan, V.Srikannathasan, Y.V.Le Bihan, A.Szykowska, C.Johansson, C.Gileadi, C.H.Arrowsmith, A.M.Edwards, C.Bountra, F.Von Delft, U.Oppermann, K.Huber. N/A N/A.
Page generated: Wed Dec 16 06:30:57 2020

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